Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39695 * 119.84970 * 2 1 4 4 S 1.75805 * 130.12285 * 359.97438 * 3 2 1 5 5 C 1.69978 * 93.23371 * 180.02562 * 4 3 2 6 6 C 1.36465 * 111.95995 * 359.97438 * 5 4 3 7 7 C 1.40814 * 123.29455 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00451 * 159.14129 * 7 6 5 9 9 C 1.39679 * 119.99615 * 339.13923 * 7 6 5 10 10 N 1.31098 * 119.99854 * 344.90532 * 9 7 6 11 11 Si 1.86797 * 119.99919 * 164.90547 * 9 7 6 12 12 H 1.48499 * 109.47064 * 60.00009 * 11 9 7 13 13 H 1.48496 * 109.47142 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47005 * 299.99915 * 11 9 7 15 15 C 1.39414 * 119.69766 * 179.97438 * 3 2 1 16 16 C 1.40701 * 119.36232 * 359.97438 * 15 3 2 17 17 C 1.37227 * 120.43671 * 359.97438 * 16 15 3 18 18 C 1.38396 * 119.85019 * 179.97438 * 2 1 3 19 19 S 1.76196 * 119.99166 * 359.97438 * 18 2 1 20 20 H 1.08997 * 109.47375 * 89.99888 * 1 2 3 21 21 H 1.09001 * 109.46836 * 210.00013 * 1 2 3 22 22 H 1.09006 * 109.46910 * 329.99824 * 1 2 3 23 23 H 1.07996 * 124.01766 * 179.97438 * 5 4 3 24 24 H 0.96998 * 120.00056 * 180.02562 * 10 9 7 25 25 H 1.07999 * 119.77643 * 180.02562 * 16 15 3 26 26 H 1.08000 * 119.90631 * 180.02562 * 17 16 15 27 27 H 1.34504 * 103.00366 * 270.02512 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2023 1.2116 0.0000 4 16 1.6002 2.8634 -0.0006 5 6 3.1618 3.5346 -0.0009 6 6 4.1305 2.5734 0.0000 7 6 5.5082 2.8644 0.0005 8 1 6.2171 2.1211 0.3342 9 6 5.9581 4.1145 -0.4307 10 7 5.1564 4.9028 -1.1050 11 14 7.7018 4.6631 -0.0464 12 1 8.6655 3.7076 -0.6493 13 1 7.9298 6.0182 -0.6093 14 1 7.8962 4.6999 1.4254 15 6 3.5964 1.2079 0.0005 16 6 4.2831 -0.0202 0.0016 17 6 3.5896 -1.2043 0.0027 18 6 2.1958 -1.2003 0.0005 19 16 1.3106 -2.7238 0.0019 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 3.3634 4.5956 -0.0017 24 1 5.4689 5.7708 -1.4047 25 1 5.3630 -0.0308 0.0025 26 1 4.1254 -2.1421 0.0039 27 1 1.1586 -2.9843 1.3127 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306954987.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = 24.691406 kcal Electronic energy + Delta-G solvation = -13384.032562 eV Core-core repulsion = 11130.514143 eV Total energy + Delta-G solvation = -2253.518419 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.76292 -35.21040 -32.61459 -31.92507 -28.40057 -26.87924 -25.54976 -22.67765 -21.08835 -19.63092 -17.77036 -16.52804 -16.43292 -15.24446 -14.91266 -14.36612 -14.18469 -13.56696 -13.02162 -12.72491 -12.10945 -12.08217 -11.84622 -11.47054 -11.34533 -11.16231 -10.87642 -10.64422 -10.43033 -10.13842 -9.80925 -9.44711 -9.22775 -8.46553 -7.84368 -7.51183 -6.83192 -6.69583 -4.35138 1.32833 1.89923 2.03269 2.75210 2.93599 3.05639 3.06571 3.09508 3.62741 3.74257 3.94673 4.33899 5.22499 5.30407 5.46848 5.61787 5.92259 5.95954 6.11540 6.19503 6.30640 6.58145 6.80415 6.92355 7.01004 7.13157 7.39303 7.64809 7.88167 8.39194 8.71118 8.82285 10.22670 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.006819 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.009219 B = 4105.358614 C = 4838.496736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 C -0.154 4.154 4 S 0.049 5.951 5 C -0.347 4.347 6 C 0.074 3.926 7 C -0.436 4.436 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.797 5.797 11 Si 0.912 3.088 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.033 4.033 16 C -0.087 4.087 17 C -0.098 4.098 18 C -0.122 4.122 19 S -0.137 6.137 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.162 0.838 24 H 0.279 0.721 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -6.899 1.906 8.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.016 4.016 3 C -0.271 4.271 4 S 0.313 5.687 5 C -0.483 4.483 6 C 0.065 3.935 7 C -0.469 4.469 8 H 0.094 0.906 9 C -0.146 4.146 10 N -0.424 5.424 11 Si 0.736 3.264 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.190 1.190 15 C -0.044 4.044 16 C -0.108 4.108 17 C -0.123 4.123 18 C -0.236 4.236 19 S 0.020 5.980 20 H 0.095 0.905 21 H 0.092 0.908 22 H 0.082 0.918 23 H 0.179 0.821 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.028 -6.698 1.554 9.144 hybrid contribution 2.862 0.613 1.069 3.116 sum -3.165 -6.085 2.623 7.344 Atomic orbital electron populations 1.20932 0.90993 1.02576 1.02934 1.19473 0.95376 0.90046 0.96701 1.22545 0.97004 0.97392 1.10176 1.81859 1.12132 0.94094 1.80606 1.24418 0.92087 1.03502 1.28337 1.17346 0.94495 0.86369 0.95294 1.18891 0.91249 0.98773 1.37961 0.90606 1.25771 0.99709 0.96324 0.92819 1.69863 1.37174 1.09243 1.26093 0.86304 0.81991 0.78240 0.79818 1.19088 1.20389 1.18987 1.19936 0.91686 0.95105 0.97705 1.20842 0.99637 0.90309 1.00031 1.21007 0.92306 0.97853 1.01141 1.20560 0.95352 0.92986 1.14703 1.85607 1.74886 1.26462 1.11029 0.90510 0.90798 0.91760 0.82054 0.91044 0.85760 0.85770 0.97180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.42 36.01 0.34 -1.47 15 2 C -0.01 -0.15 5.93 -104.02 -0.62 -0.77 15 3 C -0.15 -3.38 6.27 -38.60 -0.24 -3.62 15 4 S 0.05 1.07 22.22 -107.50 -2.39 -1.32 15 5 C -0.35 -8.93 9.51 30.09 0.29 -8.64 15 6 C 0.07 1.92 5.69 -106.18 -0.60 1.31 15 7 C -0.44 -11.33 9.06 -38.07 -0.34 -11.68 15 8 H 0.08 1.86 7.66 -52.49 -0.40 1.46 15 9 C 0.07 1.75 5.31 -17.33 -0.09 1.66 15 10 N -0.80 -20.65 10.90 55.54 0.61 -20.04 15 11 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 15 12 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 15 C -0.03 -0.78 6.03 -105.15 -0.63 -1.41 15 16 C -0.09 -1.77 9.85 -39.02 -0.38 -2.15 15 17 C -0.10 -1.76 9.76 -39.52 -0.39 -2.15 15 18 C -0.12 -2.17 6.10 -39.10 -0.24 -2.41 15 19 S -0.14 -2.01 23.93 -107.50 -2.57 -4.58 15 20 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.07 1.02 6.74 -51.93 -0.35 0.67 15 22 H 0.06 0.97 7.57 -51.93 -0.39 0.58 15 23 H 0.16 4.38 6.31 -52.49 -0.33 4.05 15 24 H 0.28 6.62 8.30 -40.82 -0.34 6.28 15 25 H 0.12 2.36 7.83 -52.49 -0.41 1.95 15 26 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 27 H 0.06 0.86 9.07 97.61 0.89 1.75 15 LS Contribution 260.55 15.07 3.93 3.93 Total: -1.00 -26.62 260.55 -9.36 -35.98 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -0.98 Total: 3.72 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.92 Total: -31.32 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.04 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -4.96 Total: -5.90 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.62 -9.36 -35.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954987.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.673 kcal (2) G-P(sol) polarization free energy of solvation -26.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds