Wall clock time and date at job start Mon Mar 30 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38542 * 120.08539 * 2 1 4 4 S 1.76209 * 119.71092 * 0.02562 * 3 2 1 5 5 C 1.38525 * 120.58220 * 179.97438 * 3 2 1 6 6 C 1.41327 * 120.83248 * 0.02562 * 5 3 2 7 7 C 1.45491 * 129.09158 * 179.97438 * 6 5 3 8 8 C 1.31862 * 114.88109 * 180.02562 * 7 6 5 9 9 S 1.75291 * 111.34082 * 0.02562 * 8 7 6 10 10 C 1.39410 * 119.06197 * 359.97438 * 6 5 3 11 11 C 1.40225 * 120.09037 * 179.73228 * 2 1 3 12 12 C 1.40929 * 120.05125 * 359.97438 * 11 2 1 13 13 H 1.07999 * 119.99776 * 38.73277 * 12 11 2 14 14 C 1.39880 * 119.99958 * 218.72133 * 12 11 2 15 15 N 1.30885 * 119.99977 * 20.87854 * 14 12 11 16 16 Si 1.86805 * 119.99965 * 200.87348 * 14 12 11 17 17 H 1.48502 * 109.46980 * 59.99955 * 16 14 12 18 18 H 1.48495 * 109.47021 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46730 * 300.00426 * 16 14 12 20 20 H 1.09001 * 109.47578 * 89.99813 * 1 2 3 21 21 H 1.09005 * 109.46766 * 209.99797 * 1 2 3 22 22 H 1.09001 * 109.47248 * 329.99711 * 1 2 3 23 23 H 1.34498 * 102.99690 * 269.97844 * 4 3 2 24 24 H 1.08009 * 119.58630 * 179.97438 * 5 3 2 25 25 H 1.08001 * 122.55991 * 0.02562 * 7 6 5 26 26 H 1.08008 * 124.32838 * 179.97438 * 8 7 6 27 27 H 0.97004 * 120.00233 * 181.97362 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1988 0.0000 4 16 1.3150 2.7216 0.0007 5 6 3.5867 1.2108 0.0005 6 6 4.3215 0.0036 0.0005 7 6 5.7631 -0.1929 0.0005 8 6 6.1512 -1.4531 0.0000 9 16 4.7786 -2.5434 -0.0013 10 6 3.6327 -1.2085 0.0006 11 6 2.2100 -1.2133 0.0057 12 6 1.5084 -2.4355 0.0119 13 1 0.6066 -2.5434 -0.5724 14 6 1.9802 -3.5088 0.7748 15 7 2.7969 -3.2923 1.7743 16 14 1.4444 -5.2513 0.3670 17 1 1.8606 -5.5857 -1.0187 18 1 2.0790 -6.1995 1.3174 19 1 -0.0329 -5.3537 0.4784 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.1628 2.9836 -1.3097 24 1 4.1118 2.1546 0.0001 25 1 6.4620 0.6305 0.0009 26 1 7.1830 -1.7727 -0.0004 27 1 3.1467 -4.0389 2.2854 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306955163.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:42 Heat of formation + Delta-G solvation = 28.172938 kcal Electronic energy + Delta-G solvation = -13755.598119 eV Core-core repulsion = 11502.230672 eV Total energy + Delta-G solvation = -2253.367448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.20555 -34.95675 -33.49964 -30.48924 -29.55635 -26.07991 -24.98608 -22.15613 -21.05128 -19.40364 -17.72558 -16.66433 -15.94564 -15.28951 -14.75408 -14.21571 -13.55995 -13.17500 -12.94586 -12.85246 -12.01207 -11.79695 -11.66786 -11.35474 -11.16491 -11.01850 -10.85323 -10.63984 -10.21307 -9.89133 -9.64645 -9.54100 -8.91481 -8.28786 -7.43752 -7.29426 -7.05032 -6.29271 -4.57703 1.88160 2.00072 2.61442 2.80672 2.97040 3.02785 3.06222 3.34883 3.42402 3.55773 3.86929 4.43622 5.17223 5.56650 6.02382 6.12849 6.25383 6.45870 6.60416 6.61271 6.77851 6.85475 6.95679 7.11103 7.27497 7.37471 7.45385 7.72853 7.80095 8.24989 8.54658 8.68110 10.03041 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.011015 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.408496 B = 2541.430168 C = 3723.951039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.138 4.138 3 C -0.065 4.065 4 S -0.161 6.161 5 C -0.148 4.148 6 C -0.069 4.069 7 C -0.127 4.127 8 C -0.236 4.236 9 S 0.113 5.887 10 C -0.143 4.143 11 C 0.148 3.852 12 C -0.467 4.467 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.767 5.767 16 Si 0.898 3.102 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.263 1.263 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 1.434 -2.245 3.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C -0.178 4.178 4 S -0.003 6.003 5 C -0.172 4.172 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.371 4.371 9 S 0.379 5.621 10 C -0.260 4.260 11 C 0.140 3.860 12 C -0.496 4.496 13 H 0.105 0.895 14 C -0.148 4.148 15 N -0.392 5.392 16 Si 0.721 3.279 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.188 1.188 20 H 0.060 0.940 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.025 0.975 24 H 0.125 0.875 25 H 0.140 0.860 26 H 0.163 0.837 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.190 0.524 -1.796 2.217 hybrid contribution 0.637 -0.008 -1.036 1.216 sum 1.827 0.516 -2.832 3.409 Atomic orbital electron populations 1.20575 0.91940 1.02295 1.00118 1.19869 0.95092 0.90861 1.08776 1.20317 0.94501 0.92652 1.10316 1.85381 1.75532 1.28524 1.10834 1.20550 0.91687 0.95153 1.09775 1.18987 0.91455 0.93241 1.04136 1.20770 0.93933 0.96361 1.04908 1.25284 1.03380 0.98597 1.09807 1.83807 0.92983 1.08793 1.76535 1.22757 0.97471 0.93795 1.11991 1.16666 0.87854 0.92311 0.89151 1.19296 1.10296 0.94979 1.25037 0.89483 1.25817 0.94266 1.01246 0.93454 1.69819 1.23037 1.34911 1.11416 0.86477 0.80137 0.81370 0.79887 1.18547 1.20014 1.18782 0.93975 0.91488 0.91798 0.97502 0.87547 0.85992 0.83653 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.00 36.00 0.32 -1.56 15 2 C -0.14 -3.25 5.95 -103.76 -0.62 -3.87 15 3 C -0.06 -1.44 6.08 -39.36 -0.24 -1.68 15 4 S -0.16 -2.99 23.91 -107.50 -2.57 -5.56 15 5 C -0.15 -3.28 9.82 -38.30 -0.38 -3.65 15 6 C -0.07 -1.59 6.03 -105.40 -0.64 -2.23 15 7 C -0.13 -2.56 10.39 -38.60 -0.40 -2.96 15 8 C -0.24 -4.58 11.02 28.83 0.32 -4.26 15 9 S 0.11 2.51 19.86 -107.50 -2.13 0.37 15 10 C -0.14 -3.56 5.74 -37.60 -0.22 -3.77 15 11 C 0.15 3.76 5.37 -106.58 -0.57 3.19 15 12 C -0.47 -11.64 7.61 -37.95 -0.29 -11.92 15 13 H 0.09 2.09 7.45 -52.49 -0.39 1.70 15 14 C 0.07 1.72 4.26 -17.34 -0.07 1.65 15 15 N -0.77 -18.93 10.69 55.54 0.59 -18.34 15 16 Si 0.90 18.04 29.61 -169.99 -5.03 13.01 15 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.07 1.40 6.96 -51.93 -0.36 1.04 15 22 H 0.06 1.21 6.75 -51.93 -0.35 0.86 15 23 H 0.06 1.05 9.07 97.61 0.89 1.94 15 24 H 0.11 2.11 8.06 -52.48 -0.42 1.69 15 25 H 0.12 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.15 2.30 8.06 -52.48 -0.42 1.87 15 27 H 0.29 6.57 8.30 -40.82 -0.34 6.23 15 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -25.92 257.50 -9.09 -35.00 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -1.04 Total: 2.71 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.78 Total: -31.07 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.59 Total: -18.34 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -4.70 Total: -5.19 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.92 -9.09 -35.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306955163.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.174 kcal (2) G-P(sol) polarization free energy of solvation -25.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds