Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35659 * 119.70221 * 2 1 4 4 C 1.39815 * 120.54816 * 180.02562 * 3 2 1 5 5 S 1.76202 * 119.98015 * 180.02562 * 4 3 2 6 6 C 1.38669 * 120.03525 * 359.97438 * 4 3 2 7 7 C 1.39249 * 120.22696 * 359.97438 * 6 4 3 8 8 S 1.75993 * 130.18927 * 179.97438 * 7 6 4 9 9 C 1.75453 * 91.77660 * 180.02562 * 8 7 6 10 10 C 1.39842 * 124.83017 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00490 * 179.97438 * 10 9 8 12 12 C 1.40061 * 119.99856 * 359.95594 * 10 9 8 13 13 N 1.30850 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00107 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47179 * 59.99875 * 14 12 10 16 16 H 1.48499 * 109.47379 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47132 * 300.00299 * 14 12 10 18 18 C 1.37025 * 110.34780 * 359.97438 * 9 8 7 19 19 C 1.39607 * 115.07378 * 0.02562 * 18 9 8 20 20 H 1.09007 * 109.46829 * 89.99996 * 1 2 3 21 21 H 1.08993 * 109.47412 * 210.00044 * 1 2 3 22 22 H 1.09000 * 109.46909 * 330.00204 * 1 2 3 23 23 H 1.08002 * 119.72636 * 0.04232 * 3 2 1 24 24 H 1.34498 * 103.00011 * 269.97631 * 5 4 3 25 25 H 1.07998 * 119.88481 * 180.02562 * 6 4 3 26 26 H 0.96995 * 119.99964 * 179.97438 * 13 12 10 27 27 H 1.08002 * 122.46605 * 179.72896 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1792 1.1784 0.0000 4 6 3.5772 1.1990 -0.0005 5 16 4.4350 2.7381 0.0002 6 6 4.2889 0.0089 -0.0005 7 6 3.6161 -1.2103 0.0005 8 16 4.2445 -2.8542 0.0002 9 6 2.6258 -3.5312 0.0014 10 6 2.3319 -4.8983 0.0023 11 1 1.3040 -5.2297 0.0034 12 6 3.3706 -5.8379 0.0012 13 7 4.6159 -5.4364 0.0000 14 14 2.9780 -7.6642 0.0016 15 1 2.1883 -8.0010 -1.2100 16 1 4.2427 -8.4424 0.0010 17 1 2.1907 -8.0010 1.2149 18 6 1.6906 -2.5297 0.0026 19 6 2.2109 -1.2343 0.0020 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6299 2.1083 0.0007 24 1 4.5823 3.0030 -1.3102 25 1 5.3687 0.0277 -0.0005 26 1 5.3353 -6.0871 -0.0004 27 1 0.6289 -2.7280 -0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306957589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = 6.233639 kcal Electronic energy + Delta-G solvation = -13220.086023 eV Core-core repulsion = 10965.767216 eV Total energy + Delta-G solvation = -2254.318807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.41762 -35.14692 -33.22452 -31.89689 -29.19009 -26.58112 -25.12541 -22.54174 -20.84783 -19.37558 -17.88413 -17.15714 -15.74044 -15.54143 -14.80587 -14.22412 -14.00815 -13.22862 -12.95505 -12.50168 -12.20157 -12.04709 -11.81867 -11.63270 -11.57435 -11.26754 -11.07163 -10.66606 -10.36656 -9.99339 -9.92020 -9.33982 -9.16830 -8.39780 -7.66502 -7.49970 -7.33014 -6.48968 -4.85134 1.64987 2.30221 2.41354 2.72240 2.75557 2.80218 3.12569 3.29291 3.45840 3.57870 3.72621 4.46641 4.91748 5.64007 5.79749 5.95844 6.18791 6.22880 6.41199 6.49799 6.52923 6.77230 6.86555 7.03306 7.18859 7.30068 7.39697 7.62189 7.72723 7.91475 8.15695 8.23394 9.47373 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.039834 B = 0.006194 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.752278 B = 4519.235455 C = 5201.208762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.134 4.134 3 C -0.061 4.061 4 C -0.191 4.191 5 S -0.152 6.152 6 C 0.005 3.995 7 C -0.280 4.280 8 S 0.144 5.856 9 C 0.057 3.943 10 C -0.370 4.370 11 H 0.102 0.898 12 C 0.050 3.950 13 N -0.767 5.767 14 Si 0.942 3.058 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.257 1.257 18 C -0.359 4.359 19 C 0.046 3.954 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.111 0.889 26 H 0.305 0.695 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 1.470 -0.322 1.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C -0.084 4.084 4 C -0.306 4.306 5 S 0.005 5.995 6 C -0.020 4.020 7 C -0.396 4.396 8 S 0.404 5.596 9 C -0.063 4.063 10 C -0.404 4.404 11 H 0.120 0.880 12 C -0.173 4.173 13 N -0.392 5.392 14 Si 0.764 3.236 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.182 1.182 18 C -0.384 4.384 19 C 0.038 3.962 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.128 0.872 24 H 0.013 0.987 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.926 1.584 -0.100 1.838 hybrid contribution -1.911 -0.855 -1.084 2.358 sum -0.985 0.729 -1.184 1.704 Atomic orbital electron populations 1.20550 0.92398 1.01448 1.00871 1.19290 0.94762 0.91696 1.08024 1.20369 0.92393 0.96638 0.99043 1.20326 0.94946 0.92669 1.22634 1.85448 1.76576 1.26929 1.10520 1.20530 0.97787 0.89705 0.93975 1.23610 0.97645 1.00812 1.17552 1.84849 1.06914 0.89332 1.78493 1.21521 0.94578 0.96455 0.93760 1.19385 0.95550 0.89035 1.36384 0.88028 1.26393 0.94103 1.04369 0.92386 1.68660 1.00655 1.38772 1.31148 0.85742 0.79344 0.77874 0.80625 1.18196 1.19544 1.18155 1.19633 0.98180 0.89772 1.30776 1.17995 0.91527 0.92978 0.93730 0.92733 0.92011 0.92942 0.87182 0.98655 0.87120 0.88170 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.79 36.01 0.35 -1.31 15 2 C -0.13 -2.84 5.92 -104.07 -0.62 -3.45 15 3 C -0.06 -1.24 9.30 -39.91 -0.37 -1.61 15 4 C -0.19 -3.94 6.13 -38.83 -0.24 -4.18 15 5 S -0.15 -2.66 25.77 -107.50 -2.77 -5.43 15 6 C 0.00 0.11 9.80 -39.05 -0.38 -0.28 15 7 C -0.28 -6.67 6.46 -38.34 -0.25 -6.92 15 8 S 0.14 3.45 20.12 -107.50 -2.16 1.29 15 9 C 0.06 1.42 6.11 -39.42 -0.24 1.18 15 10 C -0.37 -8.67 9.26 -38.30 -0.35 -9.02 15 11 H 0.10 2.22 7.85 -52.49 -0.41 1.81 15 12 C 0.05 1.09 5.50 -17.29 -0.10 0.99 15 13 N -0.77 -17.07 10.58 55.56 0.59 -16.48 15 14 Si 0.94 15.97 29.56 -169.99 -5.03 10.95 15 15 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 16 H -0.27 -4.46 7.11 56.52 0.40 -4.06 15 17 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 18 C -0.36 -8.75 9.55 -39.51 -0.38 -9.13 15 19 C 0.05 1.10 5.82 -107.04 -0.62 0.48 15 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.06 1.08 7.11 -51.93 -0.37 0.71 15 22 H 0.05 0.79 8.07 -51.93 -0.42 0.37 15 23 H 0.11 1.94 8.06 -52.49 -0.42 1.52 15 24 H 0.05 0.81 9.07 97.61 0.89 1.70 15 25 H 0.11 2.22 8.06 -52.49 -0.42 1.80 15 26 H 0.30 6.05 8.30 -40.82 -0.34 5.71 15 27 H 0.11 2.53 7.34 -52.49 -0.39 2.15 15 LS Contribution 262.99 15.07 3.96 3.96 Total: -1.00 -24.96 262.99 -9.70 -34.67 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -1.10 Total: 4.30 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -3.19 Total: -33.24 kcal Atomic # 7 Polarization: -17.07 SS G_CDS: 0.59 Total: -16.48 kcal Atomic # 14 Polarization: 15.97 SS G_CDS: -5.03 Total: 10.95 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -4.93 Total: -4.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -24.96 -9.70 -34.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306957589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.899 kcal (2) G-P(sol) polarization free energy of solvation -24.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds