Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35659 * 119.70221 * 2 1 4 4 C 1.39815 * 120.54816 * 180.02562 * 3 2 1 5 5 S 1.76202 * 119.98015 * 180.02562 * 4 3 2 6 6 C 1.38669 * 120.03525 * 359.97438 * 4 3 2 7 7 C 1.39249 * 120.22696 * 359.97438 * 6 4 3 8 8 S 1.75993 * 130.18927 * 179.97438 * 7 6 4 9 9 C 1.75453 * 91.77660 * 180.02562 * 8 7 6 10 10 C 1.39842 * 124.83017 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00490 * 179.97438 * 10 9 8 12 12 C 1.40061 * 119.99856 * 359.95594 * 10 9 8 13 13 N 1.30850 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00107 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47179 * 59.99875 * 14 12 10 16 16 H 1.48499 * 109.47379 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47132 * 300.00299 * 14 12 10 18 18 C 1.37025 * 110.34780 * 359.97438 * 9 8 7 19 19 C 1.39607 * 115.07378 * 0.02562 * 18 9 8 20 20 H 1.09007 * 109.46829 * 89.99996 * 1 2 3 21 21 H 1.08993 * 109.47412 * 210.00044 * 1 2 3 22 22 H 1.09000 * 109.46909 * 330.00204 * 1 2 3 23 23 H 1.08002 * 119.72636 * 0.04232 * 3 2 1 24 24 H 1.34498 * 103.00011 * 269.97631 * 5 4 3 25 25 H 1.07998 * 119.88481 * 180.02562 * 6 4 3 26 26 H 0.96995 * 119.99964 * 179.97438 * 13 12 10 27 27 H 1.08002 * 122.46605 * 179.72896 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1792 1.1784 0.0000 4 6 3.5772 1.1990 -0.0005 5 16 4.4350 2.7381 0.0002 6 6 4.2889 0.0089 -0.0005 7 6 3.6161 -1.2103 0.0005 8 16 4.2445 -2.8542 0.0002 9 6 2.6258 -3.5312 0.0014 10 6 2.3319 -4.8983 0.0023 11 1 1.3040 -5.2297 0.0034 12 6 3.3706 -5.8379 0.0012 13 7 4.6159 -5.4364 0.0000 14 14 2.9780 -7.6642 0.0016 15 1 2.1883 -8.0010 -1.2100 16 1 4.2427 -8.4424 0.0010 17 1 2.1907 -8.0010 1.2149 18 6 1.6906 -2.5297 0.0026 19 6 2.2109 -1.2343 0.0020 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6299 2.1083 0.0007 24 1 4.5823 3.0030 -1.3102 25 1 5.3687 0.0277 -0.0005 26 1 5.3353 -6.0871 -0.0004 27 1 0.6289 -2.7280 -0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306957589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = -4.516325 kcal Electronic energy + Delta-G solvation = -13220.552177 eV Core-core repulsion = 10965.767216 eV Total energy + Delta-G solvation = -2254.784961 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09108 -36.85212 -34.92255 -33.47352 -30.91564 -28.17324 -26.77804 -24.25769 -22.49437 -21.09738 -19.62304 -18.64687 -17.37357 -17.13777 -16.47483 -15.79088 -15.61553 -14.80581 -14.51888 -14.14814 -13.71324 -13.63478 -13.44706 -13.09015 -13.08461 -12.89607 -12.59451 -12.07480 -11.94260 -11.68722 -11.48449 -10.98315 -10.93237 -10.09412 -9.24464 -9.08422 -8.94807 -8.28962 -6.62632 -0.00779 0.65960 0.84863 1.24658 1.34738 1.40118 1.52157 1.72751 1.85108 2.05474 2.11124 2.78026 3.17518 4.05356 4.24318 4.49461 4.62072 4.81365 4.84014 4.89476 4.97984 5.10058 5.27009 5.35857 5.43857 5.59163 5.70857 5.90402 6.00644 6.21324 6.42008 6.47158 7.87057 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.039834 B = 0.006194 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.752278 B = 4519.235455 C = 5201.208762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.143 4.143 3 C -0.064 4.064 4 C -0.195 4.195 5 S -0.122 6.122 6 C -0.011 4.011 7 C -0.302 4.302 8 S 0.124 5.876 9 C 0.029 3.971 10 C -0.396 4.396 11 H 0.109 0.891 12 C 0.015 3.985 13 N -0.791 5.791 14 Si 1.015 2.985 15 H -0.253 1.253 16 H -0.260 1.260 17 H -0.253 1.253 18 C -0.384 4.384 19 C 0.022 3.978 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.141 0.859 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.315 0.685 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 2.017 -0.412 2.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C -0.086 4.086 4 C -0.309 4.309 5 S 0.035 5.965 6 C -0.035 4.035 7 C -0.418 4.418 8 S 0.383 5.617 9 C -0.091 4.091 10 C -0.429 4.429 11 H 0.127 0.873 12 C -0.205 4.205 13 N -0.416 5.416 14 Si 0.833 3.167 15 H -0.177 1.177 16 H -0.183 1.183 17 H -0.177 1.177 18 C -0.408 4.408 19 C 0.014 3.986 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.099 0.901 23 H 0.159 0.841 24 H 0.026 0.974 25 H 0.139 0.861 26 H 0.129 0.871 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.536 2.155 -0.188 2.229 hybrid contribution -1.736 -0.843 -1.071 2.207 sum -1.200 1.313 -1.258 2.178 Atomic orbital electron populations 1.20581 0.89872 1.02511 1.01938 1.19743 0.96828 0.91038 1.06994 1.20752 0.92439 0.97479 0.97966 1.20714 0.95743 0.93964 1.20513 1.85311 1.75990 1.24034 1.11202 1.20752 0.98493 0.89688 0.94602 1.23818 0.98113 1.01155 1.18673 1.84628 1.07339 0.90347 1.79372 1.21863 0.94903 0.97495 0.94840 1.19763 0.96708 0.89182 1.37284 0.87302 1.27366 0.93426 1.08623 0.91055 1.68688 1.01658 1.40624 1.30647 0.84692 0.79512 0.71841 0.80690 1.17735 1.18335 1.17700 1.19749 0.98231 0.90319 1.32463 1.18316 0.91963 0.93873 0.94492 0.91553 0.92702 0.90109 0.84127 0.97354 0.86089 0.87086 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 9.79 71.24 0.70 -2.35 15 2 C -0.14 -5.90 5.92 -19.51 -0.12 -6.01 15 3 C -0.06 -2.43 9.30 22.05 0.21 -2.22 15 4 C -0.20 -7.69 6.13 22.75 0.14 -7.55 15 5 S -0.12 -3.94 25.77 -56.49 -1.46 -5.39 15 6 C -0.01 -0.46 9.80 22.62 0.22 -0.24 15 7 C -0.30 -14.69 6.46 23.08 0.15 -14.54 15 8 S 0.12 6.15 20.12 -56.49 -1.14 5.01 15 9 C 0.03 1.49 6.11 22.37 0.14 1.63 15 10 C -0.40 -19.05 9.26 23.10 0.21 -18.84 15 11 H 0.11 4.87 7.85 -2.91 -0.02 4.84 15 12 C 0.02 0.67 5.50 85.28 0.47 1.14 15 13 N -0.79 -35.62 10.58 21.85 0.23 -35.38 15 14 Si 1.02 31.94 29.56 68.60 2.03 33.97 15 15 H -0.25 -7.76 7.11 99.48 0.71 -7.06 15 16 H -0.26 -7.62 7.11 99.48 0.71 -6.92 15 17 H -0.25 -7.75 7.11 99.48 0.71 -7.05 15 18 C -0.38 -19.35 9.55 22.32 0.21 -19.13 15 19 C 0.02 1.05 5.82 -21.43 -0.12 0.92 15 20 H 0.07 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.05 1.87 7.11 -2.39 -0.02 1.86 15 22 H 0.08 2.18 8.07 -2.39 -0.02 2.16 15 23 H 0.14 4.44 8.06 -2.91 -0.02 4.42 15 24 H 0.06 1.87 9.07 73.35 0.67 2.53 15 25 H 0.12 4.85 8.06 -2.91 -0.02 4.82 15 26 H 0.32 12.49 8.30 -92.71 -0.77 11.72 15 27 H 0.11 5.34 7.34 -2.91 -0.02 5.32 15 Total: -1.00 -54.07 262.99 3.74 -50.33 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.87 Total: 18.67 kcal Atomic # 6 Polarization: -69.40 SS G_CDS: 2.20 Total: -67.20 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.23 Total: -35.38 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.59 Total: -0.38 kcal Total: -54.07 3.74 -50.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306957589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.814 kcal (2) G-P(sol) polarization free energy of solvation -54.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds