Wall clock time and date at job start Mon Mar 30 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37877 * 119.53660 * 2 1 4 4 C 1.37839 * 120.74179 * 179.97438 * 3 2 1 5 5 C 1.40454 * 119.87857 * 359.97438 * 4 3 2 6 6 C 1.40913 * 120.11333 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99783 * 212.20094 * 6 5 4 8 8 C 1.39804 * 120.00293 * 32.20551 * 6 5 4 9 9 N 1.30939 * 119.99743 * 12.83443 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 192.84320 * 8 6 5 11 11 H 1.48500 * 109.47400 * 89.99981 * 10 8 6 12 12 H 1.48504 * 109.46966 * 209.99382 * 10 8 6 13 13 H 1.48499 * 109.47304 * 329.99230 * 10 8 6 14 14 C 1.42160 * 119.77077 * 359.97438 * 5 4 3 15 15 S 1.75879 * 130.46402 * 180.25430 * 14 5 4 16 16 C 1.75279 * 92.27576 * 180.02562 * 15 14 5 17 17 C 1.32476 * 111.31672 * 359.67833 * 16 15 14 18 18 S 1.76205 * 122.65058 * 180.25878 * 17 16 15 19 19 C 1.39453 * 119.65996 * 0.02562 * 14 5 4 20 20 H 1.09000 * 109.47271 * 263.30655 * 1 2 3 21 21 H 1.09003 * 109.46975 * 23.30640 * 1 2 3 22 22 H 1.08994 * 109.46939 * 143.30209 * 1 2 3 23 23 H 1.07995 * 119.63113 * 0.02562 * 3 2 1 24 24 H 1.08005 * 120.05989 * 179.97438 * 4 3 2 25 25 H 0.97003 * 120.00036 * 179.97438 * 9 8 6 26 26 H 1.07996 * 124.34054 * 179.97438 * 16 15 14 27 27 H 1.34508 * 102.99681 * 89.97804 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1868 1.1996 0.0000 4 6 3.5648 1.2286 0.0005 5 6 4.2900 0.0257 0.0016 6 6 5.6989 0.0496 0.0027 7 1 6.2526 -0.7329 -0.4950 8 6 6.3800 1.0860 0.6480 9 7 5.7356 1.8888 1.4571 10 14 8.2094 1.3256 0.3559 11 1 8.4110 2.2431 -0.7942 12 1 8.8322 1.9103 1.5705 13 1 8.8393 0.0139 0.0592 14 6 3.5976 -1.2159 0.0027 15 16 4.2104 -2.8645 0.0102 16 6 2.5930 -3.5399 0.0051 17 6 1.6730 -2.5867 0.0053 18 16 -0.0547 -2.9330 0.0075 19 6 2.2032 -1.2284 0.0022 20 1 -0.3634 -0.1198 1.0206 21 1 -0.3633 0.9438 -0.4066 22 1 -0.3633 -0.8239 -0.6141 23 1 1.6333 2.1269 0.0004 24 1 4.0861 2.1745 0.0001 25 1 6.2082 2.6077 1.9052 26 1 2.3745 -4.5976 0.0069 27 1 -0.3497 -2.9918 1.3185 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306959565.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:22 Heat of formation + Delta-G solvation = 16.525090 kcal Electronic energy + Delta-G solvation = -13537.556214 eV Core-core repulsion = 11283.683677 eV Total energy + Delta-G solvation = -2253.872537 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.97608 -36.56978 -35.12676 -32.96345 -30.19413 -28.98928 -25.67599 -24.42447 -22.33363 -21.75198 -19.49920 -18.14535 -17.66429 -16.83974 -16.36256 -16.04257 -15.44467 -15.06714 -14.58812 -14.33091 -13.54894 -13.44813 -13.19850 -13.18671 -12.88351 -12.75940 -12.48191 -12.11437 -11.98582 -11.78463 -11.31338 -11.15381 -11.03796 -9.95679 -9.15111 -8.73535 -8.68390 -8.45607 -6.37572 -0.05963 0.39294 0.77546 1.04791 1.22290 1.36366 1.45528 1.49033 1.62901 2.10681 2.17876 2.68975 3.49946 3.83246 4.39469 4.57199 4.68805 4.75582 4.84910 5.01623 5.08417 5.21046 5.24896 5.37519 5.52234 5.75909 5.90956 6.10974 6.21227 6.55468 6.80509 6.85515 8.29809 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.007843 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.714843 B = 3569.351702 C = 4342.656579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.174 4.174 3 C -0.094 4.094 4 C -0.180 4.180 5 C 0.116 3.884 6 C -0.493 4.493 7 H 0.075 0.925 8 C 0.039 3.961 9 N -0.827 5.827 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.267 1.267 13 H -0.259 1.259 14 C -0.241 4.241 15 S 0.091 5.909 16 C -0.136 4.136 17 C -0.132 4.132 18 S -0.077 6.077 19 C -0.050 4.050 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.119 0.881 24 H 0.104 0.896 25 H 0.289 0.711 26 H 0.204 0.796 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -5.964 -1.515 7.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.178 4.178 3 C -0.113 4.113 4 C -0.203 4.203 5 C 0.111 3.889 6 C -0.523 4.523 7 H 0.093 0.907 8 C -0.176 4.176 9 N -0.453 5.453 10 Si 0.801 3.199 11 H -0.185 1.185 12 H -0.192 1.192 13 H -0.183 1.183 14 C -0.357 4.357 15 S 0.354 5.646 16 C -0.273 4.273 17 C -0.259 4.259 18 S 0.078 5.922 19 C -0.058 4.058 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.111 0.889 23 H 0.137 0.863 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.220 0.780 27 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.324 -6.670 -1.561 8.101 hybrid contribution 0.518 1.341 1.179 1.859 sum -3.806 -5.329 -0.382 6.559 Atomic orbital electron populations 1.20971 0.89921 1.03175 1.01474 1.19569 0.96431 0.90251 1.11549 1.20764 0.94042 0.96934 0.99584 1.21081 0.93264 0.97274 1.08706 1.17288 0.93676 0.89010 0.88933 1.19582 0.91527 1.09237 1.31945 0.90701 1.26654 1.05516 0.93446 0.92005 1.69895 1.40551 1.14554 1.20264 0.85215 0.75948 0.79709 0.79005 1.18454 1.19188 1.18256 1.23006 0.96133 0.97375 1.19164 1.83516 1.06073 0.97060 1.77942 1.26009 0.95521 1.03957 1.01827 1.21003 0.97123 0.93421 1.14321 1.85164 1.02812 1.92754 1.11447 1.19075 0.91445 0.92910 1.02393 0.93363 0.92229 0.88893 0.86284 0.87784 0.90011 0.77957 0.96483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.35 8.85 71.24 0.63 -2.72 15 2 C -0.17 -7.63 5.96 -19.22 -0.11 -7.74 15 3 C -0.09 -4.35 9.58 22.09 0.21 -4.14 15 4 C -0.18 -9.45 8.62 22.72 0.20 -9.26 15 5 C 0.12 6.27 5.52 -21.11 -0.12 6.16 15 6 C -0.49 -26.30 8.76 23.30 0.20 -26.10 15 7 H 0.07 3.90 7.87 -2.91 -0.02 3.88 15 8 C 0.04 1.93 5.18 85.20 0.44 2.38 15 9 N -0.83 -42.94 11.18 21.81 0.24 -42.69 15 10 Si 0.98 37.98 29.58 68.60 2.03 40.01 15 11 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 12 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 13 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 14 C -0.24 -11.86 6.36 23.54 0.15 -11.71 15 15 S 0.09 3.65 22.93 -56.49 -1.30 2.35 15 16 C -0.14 -4.55 10.83 66.69 0.72 -3.83 15 17 C -0.13 -4.92 6.21 23.10 0.14 -4.77 15 18 S -0.08 -2.26 22.16 -56.49 -1.25 -3.51 15 19 C -0.05 -2.25 5.97 -20.30 -0.12 -2.37 15 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.06 1.82 8.01 -2.39 -0.02 1.80 15 22 H 0.09 3.00 5.29 -11.16 -0.06 2.94 15 23 H 0.12 4.79 8.03 -2.91 -0.02 4.77 15 24 H 0.10 5.64 6.54 -2.91 -0.02 5.62 15 25 H 0.29 13.58 8.30 -92.71 -0.77 12.81 15 26 H 0.20 4.96 8.06 -2.91 -0.02 4.94 15 27 H 0.07 1.94 9.07 73.35 0.67 2.61 15 Total: -1.00 -58.20 258.31 3.90 -54.30 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.83 Total: 13.65 kcal Atomic # 6 Polarization: -66.45 SS G_CDS: 2.35 Total: -64.11 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.24 Total: -42.69 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.55 Total: -1.16 kcal Total: -58.20 3.90 -54.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306959565.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.827 kcal (2) G-P(sol) polarization free energy of solvation -58.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds