Wall clock time and date at job start Mon Mar 30 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35106 * 119.75928 * 2 1 4 4 C 1.42285 * 121.13522 * 179.97438 * 3 2 1 5 5 C 1.40577 * 128.49919 * 179.97438 * 4 3 2 6 6 C 1.32451 * 115.85909 * 179.97438 * 5 4 3 7 7 S 1.75489 * 110.74897 * 359.74644 * 6 5 4 8 8 C 1.39773 * 119.08290 * 359.97438 * 4 3 2 9 9 C 1.40023 * 120.11916 * 0.02562 * 8 4 3 10 10 S 1.76202 * 120.12165 * 179.97438 * 9 8 4 11 11 C 1.41177 * 119.76071 * 179.97438 * 2 1 3 12 12 C 1.40704 * 120.28563 * 0.02562 * 11 2 1 13 13 H 1.07995 * 119.99836 * 314.54515 * 12 11 2 14 14 C 1.39762 * 120.00297 * 134.54341 * 12 11 2 15 15 N 1.31013 * 119.99894 * 338.92561 * 14 12 11 16 16 Si 1.86792 * 120.00034 * 158.92524 * 14 12 11 17 17 H 1.48493 * 109.47336 * 60.00034 * 16 14 12 18 18 H 1.48506 * 109.47153 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47238 * 299.99856 * 16 14 12 20 20 H 1.09006 * 109.47381 * 270.01873 * 1 2 3 21 21 H 1.09000 * 109.47392 * 30.02144 * 1 2 3 22 22 H 1.09006 * 109.47005 * 150.02267 * 1 2 3 23 23 H 1.08007 * 119.43384 * 359.97438 * 3 2 1 24 24 H 1.08001 * 122.07060 * 359.97438 * 5 4 3 25 25 H 1.07997 * 124.62854 * 180.02562 * 6 5 4 26 26 H 1.40998 * 100.00017 * 90.00434 * 10 9 8 27 27 H 0.97002 * 120.00379 * 185.14525 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1775 1.1729 0.0000 4 6 3.5999 1.2070 0.0005 5 6 4.4484 2.3279 0.0001 6 6 5.7474 2.0692 0.0014 7 16 6.0365 0.3383 0.0105 8 6 4.3085 0.0022 0.0016 9 6 3.6206 -1.2174 0.0016 10 16 4.5138 -2.7363 0.0023 11 6 2.2077 -1.2256 0.0005 12 6 1.5051 -2.4447 0.0005 13 1 0.6668 -2.5848 0.6668 14 6 1.8921 -3.4743 -0.8617 15 7 2.6013 -3.2028 -1.9293 16 14 1.3981 -5.2374 -0.4920 17 1 -0.0828 -5.3389 -0.4540 18 1 1.9292 -6.1327 -1.5511 19 1 1.9560 -5.6423 0.8233 20 1 -0.3634 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6244 2.1005 -0.0004 24 1 4.0647 3.3375 -0.0011 25 1 6.5228 2.8209 0.0016 26 1 4.6372 -2.9471 1.3910 27 1 2.8066 -3.9047 -2.5666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306976886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:55 Heat of formation + Delta-G solvation = 32.581350 kcal Electronic energy + Delta-G solvation = -13729.516584 eV Core-core repulsion = 11476.340299 eV Total energy + Delta-G solvation = -2253.176285 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.43833 -35.26916 -33.22008 -30.87448 -29.20112 -26.47787 -24.82462 -22.02086 -21.57317 -18.86035 -17.70332 -16.70852 -15.84593 -15.02640 -14.79729 -13.94179 -13.51800 -13.07622 -13.01159 -12.62776 -12.21037 -12.03058 -11.49163 -11.40604 -11.25492 -11.08055 -10.76678 -10.71240 -10.16828 -9.87266 -9.59869 -9.49999 -9.02209 -8.36102 -7.26253 -6.87441 -6.74930 -6.41022 -4.58454 1.83868 2.29446 2.58553 2.94611 2.99802 3.08438 3.09095 3.16251 3.47622 3.90311 4.05411 4.58418 5.17439 5.63052 5.96390 6.05161 6.18824 6.23778 6.45445 6.56923 6.69846 6.84776 6.87538 7.02834 7.18544 7.45460 7.49051 7.69772 7.79889 8.22183 8.56629 8.65983 10.10726 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.010004 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.658717 B = 2798.170987 C = 3636.438703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.146 4.146 3 C -0.048 4.048 4 C -0.199 4.199 5 C -0.078 4.078 6 C -0.271 4.271 7 S 0.039 5.961 8 C -0.031 4.031 9 C -0.170 4.170 10 S -0.123 6.123 11 C 0.172 3.828 12 C -0.459 4.459 13 H 0.090 0.910 14 C 0.108 3.892 15 N -0.751 5.751 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.261 1.261 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.146 0.854 26 H 0.035 0.965 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 2.942 1.883 3.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C -0.068 4.068 4 C -0.207 4.207 5 C -0.108 4.108 6 C -0.405 4.405 7 S 0.300 5.700 8 C -0.150 4.150 9 C -0.290 4.290 10 S 0.036 5.964 11 C 0.164 3.836 12 C -0.486 4.486 13 H 0.108 0.892 14 C -0.116 4.116 15 N -0.373 5.373 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.186 1.186 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.138 0.862 25 H 0.164 0.836 26 H 0.001 0.999 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.959 1.223 1.461 2.733 hybrid contribution -1.754 1.009 0.870 2.203 sum 0.205 2.232 2.331 3.234 Atomic orbital electron populations 1.20532 0.92260 1.01643 1.00410 1.19646 0.95306 0.92891 1.07082 1.20273 0.91448 0.96685 0.98396 1.17760 0.93837 0.91042 1.18063 1.19736 0.92431 0.98126 1.00522 1.24685 0.99300 0.98763 1.17718 1.83858 1.05437 1.00283 1.80435 1.22602 0.94454 0.96480 1.01438 1.20305 0.94468 0.90104 1.24160 1.86253 1.71151 1.31607 1.07430 1.17482 0.89450 0.92192 0.84448 1.19318 1.13497 0.96527 1.19300 0.89229 1.25613 0.91714 1.00608 0.93707 1.69675 1.24569 1.36381 1.06639 0.86378 0.79205 0.81441 0.79876 1.19310 1.19953 1.18568 0.93252 0.93689 0.90970 0.88165 0.86224 0.83601 0.99945 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.51 36.00 0.34 -1.37 15 2 C -0.15 -3.29 5.87 -104.63 -0.61 -3.90 15 3 C -0.05 -1.02 9.59 -39.14 -0.38 -1.40 15 4 C -0.20 -4.48 5.88 -106.89 -0.63 -5.11 15 5 C -0.08 -1.51 10.13 -40.62 -0.41 -1.92 15 6 C -0.27 -5.05 11.10 28.81 0.32 -4.73 15 7 S 0.04 0.81 22.95 -107.50 -2.47 -1.66 15 8 C -0.03 -0.75 6.34 -38.34 -0.24 -0.99 15 9 C -0.17 -4.31 5.83 -37.75 -0.22 -4.53 15 10 S -0.12 -2.96 21.29 -107.50 -2.29 -5.24 15 11 C 0.17 4.32 5.25 -106.69 -0.56 3.76 15 12 C -0.46 -11.16 7.14 -38.08 -0.27 -11.43 15 13 H 0.09 2.06 7.76 -52.49 -0.41 1.66 15 14 C 0.11 2.55 3.62 -17.33 -0.06 2.49 15 15 N -0.75 -18.64 11.18 55.54 0.62 -18.02 15 16 Si 0.91 18.11 29.61 -169.99 -5.03 13.07 15 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 19 H -0.26 -5.29 7.11 56.52 0.40 -4.88 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.04 0.73 8.07 -51.93 -0.42 0.31 15 22 H 0.07 1.39 7.08 -51.93 -0.37 1.03 15 23 H 0.10 1.83 8.06 -52.48 -0.42 1.40 15 24 H 0.12 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.15 2.24 8.06 -52.49 -0.42 1.81 15 26 H 0.04 0.82 9.55 96.90 0.93 1.75 15 27 H 0.29 6.62 8.31 -40.82 -0.34 6.28 15 LS Contribution 259.67 15.07 3.91 3.91 Total: -1.00 -26.43 259.67 -9.07 -35.50 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -1.09 Total: 1.55 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -2.73 Total: -29.13 kcal Atomic # 7 Polarization: -18.64 SS G_CDS: 0.62 Total: -18.02 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -4.75 Total: -6.90 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.43 -9.07 -35.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306976886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.086 kcal (2) G-P(sol) polarization free energy of solvation -26.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds