Wall clock time and date at job start Mon Mar 30 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35106 * 119.75928 * 2 1 4 4 C 1.42285 * 121.13522 * 179.97438 * 3 2 1 5 5 C 1.40577 * 128.49919 * 179.97438 * 4 3 2 6 6 C 1.32451 * 115.85909 * 179.97438 * 5 4 3 7 7 S 1.75489 * 110.74897 * 359.74644 * 6 5 4 8 8 C 1.39773 * 119.08290 * 359.97438 * 4 3 2 9 9 C 1.40023 * 120.11916 * 0.02562 * 8 4 3 10 10 S 1.76202 * 120.12165 * 179.97438 * 9 8 4 11 11 C 1.41177 * 119.76071 * 179.97438 * 2 1 3 12 12 C 1.40704 * 120.28563 * 0.02562 * 11 2 1 13 13 H 1.07995 * 119.99836 * 314.54515 * 12 11 2 14 14 C 1.39762 * 120.00297 * 134.54341 * 12 11 2 15 15 N 1.31013 * 119.99894 * 338.92561 * 14 12 11 16 16 Si 1.86792 * 120.00034 * 158.92524 * 14 12 11 17 17 H 1.48493 * 109.47336 * 60.00034 * 16 14 12 18 18 H 1.48506 * 109.47153 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47238 * 299.99856 * 16 14 12 20 20 H 1.09006 * 109.47381 * 270.01873 * 1 2 3 21 21 H 1.09000 * 109.47392 * 30.02144 * 1 2 3 22 22 H 1.09006 * 109.47005 * 150.02267 * 1 2 3 23 23 H 1.08007 * 119.43384 * 359.97438 * 3 2 1 24 24 H 1.08001 * 122.07060 * 359.97438 * 5 4 3 25 25 H 1.07997 * 124.62854 * 180.02562 * 6 5 4 26 26 H 1.40998 * 100.00017 * 90.00434 * 10 9 8 27 27 H 0.97002 * 120.00379 * 185.14525 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1775 1.1729 0.0000 4 6 3.5999 1.2070 0.0005 5 6 4.4484 2.3279 0.0001 6 6 5.7474 2.0692 0.0014 7 16 6.0365 0.3383 0.0105 8 6 4.3085 0.0022 0.0016 9 6 3.6206 -1.2174 0.0016 10 16 4.5138 -2.7363 0.0023 11 6 2.2077 -1.2256 0.0005 12 6 1.5051 -2.4447 0.0005 13 1 0.6668 -2.5848 0.6668 14 6 1.8921 -3.4743 -0.8617 15 7 2.6013 -3.2028 -1.9293 16 14 1.3981 -5.2374 -0.4920 17 1 -0.0828 -5.3389 -0.4540 18 1 1.9292 -6.1327 -1.5511 19 1 1.9560 -5.6423 0.8233 20 1 -0.3634 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6244 2.1005 -0.0004 24 1 4.0647 3.3375 -0.0011 25 1 6.5228 2.8209 0.0016 26 1 4.6372 -2.9471 1.3910 27 1 2.8066 -3.9047 -2.5666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306976886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:55 Heat of formation + Delta-G solvation = 19.921768 kcal Electronic energy + Delta-G solvation = -13730.065544 eV Core-core repulsion = 11476.340299 eV Total energy + Delta-G solvation = -2253.725246 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10766 -36.91602 -34.92174 -32.53365 -30.89038 -28.10845 -26.50733 -23.64540 -23.29099 -20.46858 -19.43833 -18.41301 -17.63201 -16.70668 -16.45738 -15.65079 -15.16521 -14.70673 -14.54655 -14.25023 -13.87124 -13.60629 -13.17406 -12.99116 -12.82333 -12.70360 -12.46424 -12.28288 -11.80802 -11.52263 -11.30840 -11.17126 -10.75270 -10.06801 -8.99340 -8.61639 -8.43744 -8.25568 -6.39788 0.20120 0.51514 0.92723 1.27650 1.38494 1.43127 1.48145 1.53661 1.80435 2.24042 2.25986 2.84215 3.41369 4.13544 4.44612 4.55743 4.65534 4.76042 4.96141 5.03648 5.08028 5.21913 5.29910 5.33283 5.55779 5.77181 5.84442 5.98331 6.12359 6.44540 6.82293 6.88038 8.38339 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.010004 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.658717 B = 2798.170987 C = 3636.438703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.052 4.052 4 C -0.205 4.205 5 C -0.091 4.091 6 C -0.248 4.248 7 S 0.033 5.967 8 C -0.070 4.070 9 C -0.202 4.202 10 S -0.126 6.126 11 C 0.145 3.855 12 C -0.485 4.485 13 H 0.092 0.908 14 C 0.081 3.919 15 N -0.790 5.790 16 Si 0.960 3.040 17 H -0.255 1.255 18 H -0.270 1.270 19 H -0.267 1.267 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.136 0.864 24 H 0.158 0.842 25 H 0.187 0.813 26 H 0.032 0.968 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 4.678 2.144 5.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.167 4.167 3 C -0.072 4.072 4 C -0.214 4.214 5 C -0.120 4.120 6 C -0.382 4.382 7 S 0.294 5.706 8 C -0.189 4.189 9 C -0.322 4.322 10 S 0.032 5.968 11 C 0.137 3.863 12 C -0.512 4.512 13 H 0.110 0.890 14 C -0.140 4.140 15 N -0.413 5.413 16 Si 0.782 3.218 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.192 1.192 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.154 0.846 24 H 0.176 0.824 25 H 0.204 0.796 26 H -0.002 1.002 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.772 2.962 1.726 3.859 hybrid contribution -1.590 0.681 0.807 1.909 sum 0.182 3.643 2.533 4.440 Atomic orbital electron populations 1.20508 0.89857 1.02209 1.01548 1.20101 0.97292 0.92542 1.06719 1.20670 0.91460 0.97787 0.97318 1.18340 0.94810 0.91608 1.16601 1.20032 0.92241 0.98964 1.00768 1.25191 1.00228 0.97796 1.14964 1.83829 1.03827 1.02736 1.80222 1.22945 0.96329 0.96846 1.02772 1.20611 0.95169 0.90730 1.25690 1.86100 1.71154 1.32289 1.07248 1.17899 0.89843 0.93619 0.84924 1.19478 1.14250 0.97296 1.20191 0.89005 1.26218 0.91272 1.03508 0.93006 1.69729 1.26523 1.37363 1.07666 0.85571 0.79590 0.77398 0.79267 1.17862 1.19394 1.19170 0.91706 0.91149 0.92298 0.84601 0.82427 0.79588 1.00248 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.03 9.51 71.23 0.68 -2.36 15 2 C -0.16 -7.25 5.87 -19.87 -0.12 -7.36 15 3 C -0.05 -2.14 9.59 22.55 0.22 -1.93 15 4 C -0.21 -8.86 5.88 -21.33 -0.13 -8.98 15 5 C -0.09 -3.19 10.13 21.72 0.22 -2.97 15 6 C -0.25 -8.34 11.10 66.70 0.74 -7.60 15 7 S 0.03 1.33 22.95 -56.49 -1.30 0.04 15 8 C -0.07 -3.37 6.34 23.07 0.15 -3.23 15 9 C -0.20 -10.45 5.83 23.46 0.14 -10.31 15 10 S -0.13 -6.24 21.29 -56.49 -1.20 -7.44 15 11 C 0.14 7.37 5.25 -21.20 -0.11 7.26 15 12 C -0.48 -24.04 7.14 23.24 0.17 -23.88 15 13 H 0.09 4.32 7.76 -2.91 -0.02 4.30 15 14 C 0.08 3.89 3.62 85.18 0.31 4.19 15 15 N -0.79 -40.22 11.18 21.80 0.24 -39.98 15 16 Si 0.96 37.43 29.61 68.60 2.03 39.46 15 17 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 20 H 0.06 2.10 8.14 -2.38 -0.02 2.08 15 21 H 0.07 2.12 8.07 -2.39 -0.02 2.10 15 22 H 0.06 2.25 7.08 -2.38 -0.02 2.24 15 23 H 0.14 4.46 8.06 -2.91 -0.02 4.43 15 24 H 0.16 4.32 8.06 -2.91 -0.02 4.30 15 25 H 0.19 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.03 1.55 9.55 73.80 0.70 2.26 15 27 H 0.29 13.71 8.31 -92.71 -0.77 12.94 15 Total: -1.00 -57.54 259.67 3.94 -53.60 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.91 Total: 11.48 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 2.26 Total: -57.15 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.24 Total: -39.98 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -2.50 Total: -7.40 kcal Total: -57.54 3.94 -53.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306976886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.517 kcal (2) G-P(sol) polarization free energy of solvation -57.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds