Wall clock time and date at job start Mon Mar 30 2020 06:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34031 * 122.16173 * 2 1 4 4 S 1.76199 * 124.65991 * 359.97438 * 3 2 1 5 5 S 1.75479 * 110.67713 * 179.54252 * 3 2 1 6 6 C 1.76049 * 91.59851 * 0.40812 * 5 3 2 7 7 C 1.38554 * 130.32702 * 179.48913 * 6 5 3 8 8 C 1.40501 * 120.03437 * 180.02562 * 7 6 5 9 9 C 1.40886 * 120.18600 * 179.97438 * 8 7 6 10 10 H 1.07991 * 119.99844 * 150.11713 * 9 8 7 11 11 C 1.39693 * 120.00063 * 330.11495 * 9 8 7 12 12 N 1.31005 * 119.99681 * 161.66087 * 11 9 8 13 13 Si 1.86799 * 119.99932 * 341.66475 * 11 9 8 14 14 H 1.48501 * 109.47099 * 95.41971 * 13 11 9 15 15 H 1.48503 * 109.46801 * 215.41442 * 13 11 9 16 16 H 1.48498 * 109.47421 * 335.41336 * 13 11 9 17 17 C 1.41282 * 119.62223 * 359.97438 * 8 7 6 18 18 C 1.35150 * 120.37139 * 359.97438 * 17 8 7 19 19 C 1.39944 * 122.16217 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47275 * 270.02198 * 1 2 3 21 21 H 1.08998 * 109.47404 * 30.02302 * 1 2 3 22 22 H 1.09003 * 109.46931 * 150.02811 * 1 2 3 23 23 H 1.40998 * 100.00217 * 90.00404 * 4 3 2 24 24 H 1.08002 * 119.98034 * 0.02562 * 7 6 5 25 25 H 0.97004 * 120.00060 * 179.97438 * 12 11 9 26 26 H 1.08003 * 119.81463 * 179.97438 * 17 8 7 27 27 H 1.08000 * 119.58238 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2204 1.1346 0.0000 4 16 1.5269 2.7544 -0.0006 5 16 3.9400 0.7853 0.0131 6 6 3.6378 -0.9491 0.0059 7 6 4.5245 -2.0137 0.0008 8 6 4.0399 -3.3325 -0.0050 9 6 4.9387 -4.4174 -0.0108 10 1 4.6590 -5.3527 0.4510 11 6 6.1916 -4.2834 -0.6138 12 7 7.1518 -5.1258 -0.3232 13 14 6.4978 -2.9028 -1.8343 14 1 7.1159 -1.7494 -1.1323 15 1 7.4125 -3.3802 -2.9023 16 1 5.2085 -2.4814 -2.4388 17 6 2.6463 -3.5644 -0.0052 18 6 1.7808 -2.5263 0.0008 19 6 2.2519 -1.1847 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5134 23 1 1.4301 2.9799 1.3878 24 1 5.5888 -1.8297 0.0014 25 1 8.0218 -5.0330 -0.7422 26 1 2.2703 -4.5768 -0.0101 27 1 0.7180 -2.7182 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307064138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:45 Heat of formation + Delta-G solvation = 23.607089 kcal Electronic energy + Delta-G solvation = -13408.882274 eV Core-core repulsion = 11155.316836 eV Total energy + Delta-G solvation = -2253.565438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.72371 -35.65327 -33.50700 -30.34998 -30.02268 -27.37263 -25.44401 -22.01326 -21.54494 -19.25661 -17.87224 -17.27190 -16.34258 -15.30390 -14.81417 -14.51984 -13.80507 -13.42564 -13.33053 -13.08555 -12.62127 -12.25777 -12.02818 -11.63870 -11.52915 -11.04819 -10.87788 -10.59765 -10.47974 -10.20180 -9.97842 -9.60651 -9.30987 -8.66161 -7.79574 -7.64073 -7.34827 -6.93601 -4.79852 1.23643 2.00010 2.40325 2.47372 2.74723 2.85742 2.97448 3.04696 3.13487 3.26759 3.76836 4.20569 5.06936 5.47406 5.68297 5.72424 5.88196 6.01382 6.19204 6.28256 6.42134 6.60680 6.73611 6.76511 6.97061 7.33720 7.37968 7.46662 7.69382 7.92575 8.24478 8.39327 9.63590 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.007484 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.545271 B = 3740.568313 C = 4349.097459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.031 3.969 3 C -0.280 4.280 4 S -0.094 6.094 5 S 0.030 5.970 6 C -0.034 4.034 7 C -0.242 4.242 8 C 0.110 3.890 9 C -0.404 4.404 10 H 0.101 0.899 11 C 0.080 3.920 12 N -0.779 5.779 13 Si 0.913 3.087 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.239 1.239 17 C -0.181 4.181 18 C -0.038 4.038 19 C -0.219 4.219 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.294 0.706 26 H 0.112 0.888 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 6.468 -0.534 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.016 3.984 3 C -0.506 4.506 4 S 0.061 5.939 5 S 0.292 5.708 6 C -0.151 4.151 7 C -0.269 4.269 8 C 0.103 3.897 9 C -0.431 4.431 10 H 0.119 0.881 11 C -0.143 4.143 12 N -0.400 5.400 13 Si 0.738 3.262 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.161 1.161 17 C -0.200 4.200 18 C -0.058 4.058 19 C -0.225 4.225 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.566 8.174 -0.757 9.918 hybrid contribution -0.339 -1.254 0.534 1.404 sum -5.905 6.920 -0.223 9.100 Atomic orbital electron populations 1.20735 0.90636 1.03085 1.02045 1.19027 0.95937 0.91025 0.92413 1.23882 0.97849 0.97333 1.31555 1.86176 1.81453 1.14978 1.11292 1.83833 1.05408 0.99917 1.81644 1.22336 0.96583 0.95414 1.00781 1.20181 0.96947 0.90957 1.18831 1.17639 0.92389 0.91594 0.88114 1.19663 0.96233 0.99592 1.27626 0.88080 1.26351 0.94490 0.96834 0.96632 1.69750 1.03126 1.33488 1.33638 0.86213 0.80601 0.79776 0.79598 1.19013 1.21190 1.16144 1.20726 0.93133 0.97696 1.08489 1.20386 0.97962 0.90641 0.96853 1.17494 0.91238 0.93006 1.20775 0.91471 0.90454 0.91399 0.96283 0.87608 0.89564 0.87035 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.61 36.00 0.35 -1.21 15 2 C 0.03 0.59 5.85 -105.47 -0.62 -0.03 15 3 C -0.28 -5.35 6.70 29.25 0.20 -5.16 15 4 S -0.09 -1.48 24.93 -107.50 -2.68 -4.16 15 5 S 0.03 0.62 23.28 -107.50 -2.50 -1.88 15 6 C -0.03 -0.78 6.45 -38.58 -0.25 -1.03 15 7 C -0.24 -5.78 7.18 -38.61 -0.28 -6.05 15 8 C 0.11 2.59 5.10 -106.89 -0.54 2.05 15 9 C -0.40 -9.91 9.53 -38.04 -0.36 -10.28 15 10 H 0.10 2.52 8.06 -52.49 -0.42 2.10 15 11 C 0.08 1.94 5.39 -17.36 -0.09 1.84 15 12 N -0.78 -18.93 13.94 55.53 0.77 -18.16 15 13 Si 0.91 19.89 24.51 -169.99 -4.17 15.72 15 14 H -0.26 -5.74 6.71 56.52 0.38 -5.36 15 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.24 -5.43 6.87 56.52 0.39 -5.04 15 17 C -0.18 -3.83 9.68 -39.52 -0.38 -4.21 15 18 C -0.04 -0.75 9.58 -39.16 -0.38 -1.13 15 19 C -0.22 -4.64 5.86 -106.86 -0.63 -5.27 15 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.08 1.05 7.25 -51.93 -0.38 0.68 15 22 H 0.07 0.92 7.29 -51.93 -0.38 0.54 15 23 H 0.07 1.05 9.55 96.90 0.93 1.98 15 24 H 0.11 2.55 4.72 -52.49 -0.25 2.30 15 25 H 0.29 6.43 8.30 -40.82 -0.34 6.09 15 26 H 0.11 2.11 8.06 -52.48 -0.42 1.69 15 27 H 0.10 1.71 7.36 -52.49 -0.39 1.32 15 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -25.22 257.00 -8.59 -33.81 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -0.90 Total: 1.27 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -2.99 Total: -30.48 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.77 Total: -18.16 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -5.18 Total: -6.04 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.22 -8.59 -33.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307064138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.418 kcal (2) G-P(sol) polarization free energy of solvation -25.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds