Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31860 * 122.56021 * 2 1 4 4 S 1.75299 * 111.34593 * 180.26968 * 3 2 1 5 5 C 1.75921 * 92.18172 * 0.02562 * 4 3 2 6 6 C 1.39438 * 109.75279 * 359.97438 * 5 4 3 7 7 C 1.41290 * 119.06118 * 179.97438 * 6 5 4 8 8 C 1.38558 * 120.83734 * 0.02562 * 7 6 5 9 9 S 1.76202 * 119.71172 * 180.02562 * 8 7 6 10 10 C 1.38503 * 120.58100 * 359.97438 * 8 7 6 11 11 C 1.40268 * 119.82497 * 359.97438 * 10 8 7 12 12 C 1.40925 * 120.05240 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99792 * 154.36108 * 12 11 10 14 14 C 1.39877 * 119.99969 * 334.35953 * 12 11 10 15 15 N 1.30892 * 120.00354 * 342.55758 * 14 12 11 16 16 Si 1.86805 * 119.99848 * 162.55769 * 14 12 11 17 17 H 1.48502 * 109.47160 * 90.00155 * 16 14 12 18 18 H 1.48500 * 109.46801 * 209.99944 * 16 14 12 19 19 H 1.48501 * 109.47060 * 329.99826 * 16 14 12 20 20 H 1.09007 * 109.47156 * 269.71293 * 1 2 3 21 21 H 1.08999 * 109.47011 * 29.71018 * 1 2 3 22 22 H 1.08995 * 109.47481 * 149.71239 * 1 2 3 23 23 H 1.07995 * 124.32614 * 0.24505 * 3 2 1 24 24 H 1.08004 * 119.57937 * 179.97438 * 7 6 5 25 25 H 1.34507 * 102.99768 * 269.99899 * 9 8 7 26 26 H 1.08004 * 120.08696 * 179.97438 * 10 8 7 27 27 H 0.96996 * 120.00552 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1114 0.0000 4 16 3.9361 0.7704 -0.0077 5 6 3.6599 -0.9669 -0.0118 6 6 2.2899 -1.2263 -0.0066 7 6 1.8453 -2.5675 -0.0094 8 6 2.7510 -3.6160 -0.0165 9 16 2.1638 -5.2773 -0.0204 10 6 4.1140 -3.3697 -0.0216 11 6 4.5842 -2.0482 -0.0201 12 6 5.9700 -1.7921 -0.0259 13 1 6.3458 -0.8637 -0.4298 14 6 6.8585 -2.7404 0.4915 15 7 6.4178 -3.6906 1.2766 16 14 8.6744 -2.6508 0.0622 17 1 9.3788 -1.8098 1.0631 18 1 9.2528 -4.0185 0.0700 19 1 8.8350 -2.0531 -1.2877 20 1 -0.3634 -0.0051 1.0277 21 1 -0.3633 0.8926 -0.5093 22 1 -0.3634 -0.8873 -0.5183 23 1 1.7927 2.1046 0.0038 24 1 0.7860 -2.7780 -0.0050 25 1 2.0678 -5.5673 1.2896 26 1 4.8129 -4.1931 -0.0267 27 1 7.0339 -4.3484 1.6351 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307065598.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = 23.904113 kcal Electronic energy + Delta-G solvation = -13443.234404 eV Core-core repulsion = 11189.681846 eV Total energy + Delta-G solvation = -2253.552558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.26371 -35.39818 -33.40106 -30.29004 -28.97895 -27.29345 -25.34013 -22.03690 -21.32844 -19.24368 -17.40420 -16.66392 -16.35939 -15.19320 -14.51621 -14.38190 -13.98824 -13.42619 -13.03152 -12.74270 -12.48159 -12.02557 -11.72086 -11.43711 -11.21589 -11.05664 -10.88872 -10.66396 -10.27971 -10.09904 -9.80285 -9.41971 -9.31020 -8.27455 -7.45135 -7.44279 -7.03372 -6.78659 -4.55290 1.83341 2.04581 2.54767 2.70542 2.90922 2.98039 3.03577 3.13802 3.33387 3.59450 3.78401 4.39132 5.26795 5.37538 5.62171 5.83838 5.96403 6.11112 6.28562 6.45268 6.60552 6.78191 6.93713 7.01753 7.09299 7.38810 7.56778 7.62935 7.86356 8.22989 8.54940 8.56918 9.93292 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.010212 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.041326 B = 2741.347934 C = 4217.838357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.090 4.090 3 C -0.219 4.219 4 S 0.045 5.955 5 C -0.192 4.192 6 C -0.049 4.049 7 C -0.170 4.170 8 C -0.062 4.062 9 S -0.168 6.168 10 C -0.123 4.123 11 C 0.140 3.860 12 C -0.448 4.448 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.782 5.782 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.150 0.850 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.136 0.864 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 3.068 -1.155 5.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.353 4.353 4 S 0.310 5.690 5 C -0.307 4.307 6 C -0.057 4.057 7 C -0.194 4.194 8 C -0.175 4.175 9 S -0.010 6.010 10 C -0.149 4.149 11 C 0.132 3.868 12 C -0.477 4.477 13 H 0.102 0.898 14 C -0.143 4.143 15 N -0.406 5.406 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.181 1.181 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.167 0.833 24 H 0.123 0.877 25 H 0.029 0.971 26 H 0.154 0.846 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.072 2.967 -1.232 4.445 hybrid contribution -0.123 -0.050 1.066 1.074 sum -3.195 2.917 -0.167 4.329 Atomic orbital electron populations 1.20450 0.90874 1.02023 1.01587 1.19704 0.95952 0.91649 1.03091 1.24687 0.97807 1.00998 1.11780 1.83564 1.03409 1.01520 1.80556 1.22709 0.95887 0.95326 1.16781 1.18735 0.91260 0.92443 1.03286 1.20445 0.97151 0.89444 1.12402 1.20510 0.96089 0.91868 1.09020 1.85333 1.88241 1.16148 1.11302 1.21529 0.92247 0.96957 1.04157 1.16943 0.91967 0.88831 0.89039 1.19503 0.90573 1.03364 1.34229 0.89762 1.25943 1.02195 0.93810 0.92363 1.69807 1.38276 1.11832 1.20638 0.86220 0.80845 0.78813 0.80535 1.19205 1.19717 1.18058 0.91859 0.92249 0.91585 0.83267 0.87691 0.97111 0.84610 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 10.03 36.00 0.36 -0.97 15 2 C -0.09 -1.71 5.97 -103.63 -0.62 -2.33 15 3 C -0.22 -3.97 10.76 28.83 0.31 -3.66 15 4 S 0.05 0.93 22.82 -107.50 -2.45 -1.52 15 5 C -0.19 -4.64 6.37 -37.60 -0.24 -4.88 15 6 C -0.05 -1.10 6.01 -105.40 -0.63 -1.73 15 7 C -0.17 -3.78 9.50 -38.30 -0.36 -4.14 15 8 C -0.06 -1.44 6.08 -39.37 -0.24 -1.68 15 9 S -0.17 -3.34 25.74 -107.50 -2.77 -6.10 15 10 C -0.12 -3.11 8.38 -38.72 -0.32 -3.43 15 11 C 0.14 3.62 5.58 -106.58 -0.60 3.03 15 12 C -0.45 -11.36 8.81 -37.95 -0.33 -11.70 15 13 H 0.08 2.08 7.75 -52.49 -0.41 1.67 15 14 C 0.08 1.84 5.12 -17.34 -0.09 1.75 15 15 N -0.78 -19.24 10.99 55.54 0.61 -18.63 15 16 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 15 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 19 H -0.26 -5.01 7.11 56.52 0.40 -4.60 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.06 0.74 8.11 -51.93 -0.42 0.31 15 22 H 0.07 0.95 7.57 -51.93 -0.39 0.56 15 23 H 0.15 2.19 8.06 -52.49 -0.42 1.76 15 24 H 0.11 2.10 7.61 -52.48 -0.40 1.70 15 25 H 0.06 1.24 9.07 97.61 0.89 2.13 15 26 H 0.14 3.53 6.19 -52.48 -0.32 3.20 15 27 H 0.29 6.39 8.30 -40.82 -0.34 6.05 15 LS Contribution 263.89 15.07 3.98 3.98 Total: -1.00 -26.07 263.89 -9.47 -35.54 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -1.04 Total: 3.66 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -2.77 Total: -29.74 kcal Atomic # 7 Polarization: -19.24 SS G_CDS: 0.61 Total: -18.63 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -5.22 Total: -7.62 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.07 -9.47 -35.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307065598.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.440 kcal (2) G-P(sol) polarization free energy of solvation -26.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds