Wall clock time and date at job start Mon Mar 30 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35919 * 119.68739 * 2 1 4 4 C 1.38876 * 120.72689 * 180.02562 * 3 2 1 5 5 C 1.38350 * 120.13808 * 359.95040 * 4 3 2 6 6 S 1.76202 * 119.92746 * 180.02562 * 5 4 3 7 7 C 1.40264 * 120.14466 * 0.02562 * 5 4 3 8 8 S 1.75979 * 130.26107 * 179.97438 * 7 5 4 9 9 C 1.75466 * 91.77143 * 180.02562 * 8 7 5 10 10 C 1.39962 * 124.84793 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00374 * 180.02562 * 10 9 8 12 12 C 1.40173 * 119.99902 * 0.02562 * 10 9 8 13 13 N 1.30770 * 119.99544 * 0.02562 * 12 10 9 14 14 Si 1.86789 * 120.00187 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47249 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47291 * 120.00145 * 14 12 10 17 17 H 1.48501 * 109.47428 * 240.00370 * 14 12 10 18 18 C 1.36956 * 110.30887 * 0.02562 * 9 8 7 19 19 C 1.39818 * 115.01844 * 359.77117 * 18 9 8 20 20 H 1.09002 * 109.47152 * 90.00250 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00350 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00331 * 1 2 3 23 23 H 1.08001 * 119.63791 * 359.97282 * 3 2 1 24 24 H 1.07997 * 119.92950 * 179.97438 * 4 3 2 25 25 H 1.34503 * 103.00022 * 89.99890 * 6 5 4 26 26 H 0.96999 * 119.99655 * 180.02562 * 13 12 10 27 27 H 1.07995 * 122.48993 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1802 1.1808 0.0000 4 6 3.5687 1.2060 -0.0005 5 6 4.2849 0.0223 0.0000 6 16 6.0465 0.0607 0.0000 7 6 3.6118 -1.2083 0.0005 8 16 4.2443 -2.8505 0.0005 9 6 2.6271 -3.5314 0.0005 10 6 2.3357 -4.9003 0.0000 11 1 1.3086 -5.2338 -0.0004 12 6 3.3772 -5.8385 0.0001 13 7 4.6209 -5.4347 0.0011 14 14 2.9884 -7.6655 0.0002 15 1 1.5160 -7.8583 -0.0004 16 1 3.5701 -8.2955 -1.2122 17 1 3.5700 -8.2954 1.2127 18 6 1.6906 -2.5321 -0.0001 19 6 2.2107 -1.2342 0.0045 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6292 2.1097 -0.0004 24 1 4.0905 2.1515 -0.0009 25 1 6.3490 0.0679 1.3105 26 1 5.3416 -6.0839 0.0007 27 1 0.6292 -2.7317 0.0001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307090982.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:09 Heat of formation + Delta-G solvation = 8.770475 kcal Electronic energy + Delta-G solvation = -13336.830136 eV Core-core repulsion = 11082.621334 eV Total energy + Delta-G solvation = -2254.208802 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.44015 -35.02930 -33.17850 -31.90888 -29.12605 -26.59653 -25.07059 -22.46614 -20.80549 -19.41033 -17.97886 -16.94308 -15.76472 -15.42047 -14.79750 -14.19852 -13.82133 -13.33103 -12.92304 -12.75497 -12.05912 -11.86489 -11.73304 -11.64731 -11.56029 -11.24796 -10.88429 -10.53988 -10.34935 -10.12705 -9.75492 -9.40559 -9.07214 -8.30048 -7.55871 -7.45537 -7.21857 -6.46426 -4.72603 1.64412 2.20711 2.42953 2.75486 2.82689 2.90221 3.21165 3.30863 3.55354 3.60170 3.85134 4.52146 4.96766 5.59873 5.81684 5.96911 6.02800 6.18934 6.38830 6.51408 6.62260 6.68873 6.97172 7.07104 7.22698 7.31752 7.42050 7.69331 7.81613 7.96120 8.25422 8.36538 9.61280 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.008088 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.755740 B = 3461.146480 C = 4492.133607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.143 4.143 5 C -0.042 4.042 6 S -0.156 6.156 7 C -0.231 4.231 8 S 0.173 5.827 9 C 0.044 3.956 10 C -0.380 4.380 11 H 0.099 0.901 12 C 0.052 3.948 13 N -0.774 5.774 14 Si 0.938 3.062 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.361 4.361 19 C 0.017 3.983 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.302 0.698 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 2.713 0.430 2.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.165 4.165 5 C -0.159 4.159 6 S 0.002 5.998 7 C -0.349 4.349 8 S 0.434 5.566 9 C -0.076 4.076 10 C -0.414 4.414 11 H 0.117 0.883 12 C -0.170 4.170 13 N -0.400 5.400 14 Si 0.761 3.239 15 H -0.179 1.179 16 H -0.191 1.191 17 H -0.192 1.192 18 C -0.386 4.386 19 C 0.007 3.993 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.031 0.969 26 H 0.116 0.884 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.495 1.999 0.207 2.505 hybrid contribution -2.384 -0.097 1.044 2.605 sum -0.890 1.902 1.251 2.444 Atomic orbital electron populations 1.20629 0.92479 1.01514 1.01196 1.19547 0.94861 0.92074 1.03483 1.20127 0.93586 0.96519 1.03995 1.20850 0.93738 0.95707 1.06253 1.20122 0.92088 0.93951 1.09696 1.85528 1.04536 1.98447 1.11273 1.23952 0.97521 1.00627 1.12805 1.85106 1.06023 0.88221 1.77275 1.21617 0.95092 0.96560 0.94339 1.19377 0.95327 0.88939 1.37759 0.88279 1.26344 0.94131 1.04069 0.92420 1.68612 1.00552 1.38369 1.32467 0.85709 0.80455 0.78586 0.79124 1.17872 1.19141 1.19226 1.19559 0.98050 0.89532 1.31463 1.17873 0.91102 0.93132 0.97231 0.92252 0.92886 0.91871 0.87392 0.86761 0.96938 0.88444 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.79 36.01 0.35 -1.37 15 2 C -0.10 -2.03 5.92 -103.98 -0.62 -2.65 15 3 C -0.12 -2.29 9.55 -40.18 -0.38 -2.67 15 4 C -0.14 -2.82 9.77 -39.30 -0.38 -3.20 15 5 C -0.04 -0.92 6.13 -38.78 -0.24 -1.16 15 6 S -0.16 -3.03 25.45 -107.50 -2.74 -5.77 15 7 C -0.23 -5.63 6.35 -38.11 -0.24 -5.87 15 8 S 0.17 4.30 19.76 -107.50 -2.12 2.17 15 9 C 0.04 1.13 6.12 -39.40 -0.24 0.89 15 10 C -0.38 -9.27 9.27 -38.21 -0.35 -9.62 15 11 H 0.10 2.28 7.85 -52.49 -0.41 1.86 15 12 C 0.05 1.17 5.50 -17.28 -0.10 1.07 15 13 N -0.77 -17.99 10.59 55.56 0.59 -17.40 15 14 Si 0.94 16.69 29.56 -169.99 -5.03 11.66 15 15 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 16 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 17 H -0.27 -4.68 7.11 56.52 0.40 -4.27 15 18 C -0.36 -9.00 9.56 -39.46 -0.38 -9.38 15 19 C 0.02 0.40 5.82 -107.12 -0.62 -0.22 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.05 0.76 8.07 -51.93 -0.42 0.34 15 22 H 0.06 1.09 7.12 -51.93 -0.37 0.72 15 23 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.07 1.22 9.07 97.61 0.89 2.11 15 26 H 0.30 6.25 8.29 -40.82 -0.34 5.91 15 27 H 0.11 2.54 7.35 -52.49 -0.39 2.15 15 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -26.11 262.47 -9.65 -35.75 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -1.10 Total: 3.81 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -3.20 Total: -34.19 kcal Atomic # 7 Polarization: -17.99 SS G_CDS: 0.59 Total: -17.40 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -4.86 Total: -3.60 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.11 -9.65 -35.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090982.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.525 kcal (2) G-P(sol) polarization free energy of solvation -26.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds