Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.69971 * 124.01721 * 2 1 4 4 C 1.75814 * 93.23980 * 180.22753 * 3 2 1 5 5 C 1.39888 * 130.10128 * 179.77894 * 4 3 2 6 6 C 1.37478 * 120.50450 * 180.02562 * 5 4 3 7 7 C 1.39307 * 120.11429 * 359.97438 * 6 5 4 8 8 S 1.76197 * 119.95513 * 179.97438 * 7 6 5 9 9 C 1.38152 * 120.08357 * 359.97438 * 7 6 5 10 10 C 1.39342 * 110.16957 * 359.79935 * 4 3 2 11 11 C 1.36437 * 124.02034 * 179.85093 * 2 1 3 12 12 C 1.40789 * 123.30144 * 359.97438 * 11 2 1 13 13 H 1.08006 * 120.00401 * 316.16586 * 12 11 2 14 14 C 1.39713 * 120.00284 * 136.44549 * 12 11 2 15 15 N 1.31079 * 120.00154 * 154.61834 * 14 12 11 16 16 Si 1.86801 * 119.99480 * 334.62239 * 14 12 11 17 17 H 1.48496 * 109.47331 * 95.47303 * 16 14 12 18 18 H 1.48503 * 109.46823 * 215.46968 * 16 14 12 19 19 H 1.48496 * 109.47548 * 335.46729 * 16 14 12 20 20 H 1.09004 * 109.47139 * 264.45121 * 1 2 3 21 21 H 1.08995 * 109.47644 * 24.44733 * 1 2 3 22 22 H 1.09000 * 109.47037 * 144.45232 * 1 2 3 23 23 H 1.08007 * 119.74397 * 0.04307 * 5 4 3 24 24 H 1.07994 * 119.94216 * 179.97438 * 6 5 4 25 25 H 1.34504 * 102.99971 * 90.00284 * 8 7 6 26 26 H 1.08004 * 119.87607 * 179.97438 * 9 7 6 27 27 H 0.97003 * 119.99661 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4579 1.4088 0.0000 4 6 3.9684 0.5092 -0.0070 5 6 5.2901 0.9674 -0.0144 6 6 6.3374 0.0769 -0.0195 7 6 6.0893 -1.2939 -0.0167 8 16 7.4348 -2.4315 -0.0239 9 6 4.7897 -1.7624 -0.0083 10 6 3.7119 -0.8604 -0.0046 11 6 2.2703 -1.1308 0.0029 12 6 1.7275 -2.4299 0.0068 13 1 0.8970 -2.6662 0.6556 14 6 2.2669 -3.4149 -0.8242 15 7 2.1442 -4.6805 -0.5057 16 14 3.1631 -2.9283 -2.3893 17 1 4.6230 -2.8668 -2.1251 18 1 2.8935 -3.9349 -3.4474 19 1 2.6850 -1.5965 -2.8399 20 1 -0.3633 -0.0994 1.0229 21 1 -0.3634 0.9355 -0.4253 22 1 -0.3633 -0.8361 -0.5975 23 1 5.4892 2.0290 -0.0159 24 1 7.3542 0.4407 -0.0257 25 1 7.6738 -2.6257 1.2854 26 1 4.6012 -2.8259 -0.0066 27 1 2.5191 -5.3643 -1.0826 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307102496.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = 30.842879 kcal Electronic energy + Delta-G solvation = -13750.437960 eV Core-core repulsion = 11497.186289 eV Total energy + Delta-G solvation = -2253.251671 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85560 -35.26615 -32.88543 -30.53030 -30.30413 -27.48651 -25.01426 -22.43172 -21.29255 -19.50520 -17.96782 -16.82195 -16.47366 -15.17467 -14.87644 -14.53143 -14.29485 -13.35286 -13.28481 -12.95578 -12.44889 -12.13415 -11.95419 -11.52423 -11.34681 -11.06887 -10.88567 -10.59514 -10.20613 -9.99030 -9.80218 -9.71320 -9.19592 -8.56364 -7.88159 -7.61703 -6.96219 -6.83811 -4.45624 1.30579 1.58994 2.05260 2.48535 2.91098 3.08973 3.18857 3.25603 3.32513 3.43889 3.98992 4.20203 4.90211 5.25308 5.44709 5.78079 5.88714 6.07929 6.28943 6.39354 6.53579 6.54037 6.64525 6.77353 6.85552 7.01023 7.16668 7.34938 7.80630 8.26584 8.48794 8.76935 10.08337 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.013118 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.404562 B = 2133.933004 C = 3321.148177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.364 4.364 3 S 0.074 5.926 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.074 4.074 7 C -0.134 4.134 8 S -0.141 6.141 9 C -0.013 4.013 10 C -0.080 4.080 11 C 0.085 3.915 12 C -0.451 4.451 13 H 0.094 0.906 14 C 0.097 3.903 15 N -0.806 5.806 16 Si 0.864 3.136 17 H -0.245 1.245 18 H -0.279 1.279 19 H -0.250 1.250 20 H 0.042 0.958 21 H 0.038 0.962 22 H 0.065 0.935 23 H 0.122 0.878 24 H 0.129 0.871 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 6.483 -0.416 8.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.481 4.481 3 S 0.340 5.660 4 C -0.234 4.234 5 C -0.132 4.132 6 C -0.098 4.098 7 C -0.250 4.250 8 S 0.017 5.983 9 C -0.035 4.035 10 C -0.092 4.092 11 C 0.076 3.924 12 C -0.482 4.482 13 H 0.112 0.888 14 C -0.122 4.122 15 N -0.431 5.431 16 Si 0.687 3.313 17 H -0.169 1.169 18 H -0.205 1.205 19 H -0.173 1.173 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.083 0.917 23 H 0.140 0.860 24 H 0.147 0.853 25 H 0.031 0.969 26 H 0.154 0.846 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.781 7.109 -0.664 9.187 hybrid contribution 0.015 -1.019 0.398 1.094 sum 5.797 6.091 -0.265 8.412 Atomic orbital electron populations 1.19700 0.89485 1.00186 1.00085 1.22969 0.99123 0.94359 1.31622 1.81826 0.93707 1.10346 1.80122 1.22832 0.97860 0.97507 1.05193 1.20346 0.89767 0.99005 1.04084 1.21089 0.98532 0.91395 0.98787 1.20668 0.94484 0.95119 1.14683 1.85703 1.41840 1.59410 1.11393 1.21514 0.89965 1.00165 0.91897 1.19790 0.95232 0.91501 1.02692 1.17356 0.86812 0.94200 0.94043 1.18635 1.16617 0.90785 1.22208 0.88775 1.25880 0.93357 0.94077 0.98919 1.69868 1.36332 1.01325 1.35532 0.87049 0.81855 0.80665 0.81750 1.16928 1.20453 1.17321 0.93970 0.94326 0.91652 0.85985 0.85311 0.96852 0.84612 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.72 9.88 36.01 0.36 -0.36 15 2 C -0.36 -8.30 6.30 -34.96 -0.22 -8.52 15 3 S 0.07 1.47 22.89 -107.50 -2.46 -0.99 15 4 C -0.12 -2.45 6.44 -38.55 -0.25 -2.70 15 5 C -0.11 -1.87 10.05 -39.24 -0.39 -2.26 15 6 C -0.07 -1.26 9.77 -39.46 -0.39 -1.65 15 7 C -0.13 -2.57 6.09 -39.22 -0.24 -2.81 15 8 S -0.14 -2.36 25.76 -107.50 -2.77 -5.13 15 9 C -0.01 -0.29 6.62 -38.74 -0.26 -0.55 15 10 C -0.08 -1.87 4.83 -105.21 -0.51 -2.38 15 11 C 0.09 2.12 4.61 -106.18 -0.49 1.63 15 12 C -0.45 -11.90 8.67 -38.07 -0.33 -12.23 15 13 H 0.09 2.63 8.06 -52.48 -0.42 2.21 15 14 C 0.10 2.48 4.47 -17.32 -0.08 2.41 15 15 N -0.81 -21.07 13.94 55.54 0.77 -20.29 15 16 Si 0.86 20.11 24.74 -169.99 -4.21 15.91 15 17 H -0.25 -5.54 5.86 56.52 0.33 -5.21 15 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 19 H -0.25 -6.09 7.11 56.52 0.40 -5.69 15 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.06 1.35 7.73 -51.93 -0.40 0.95 15 23 H 0.12 1.75 8.06 -52.48 -0.42 1.32 15 24 H 0.13 1.77 8.06 -52.49 -0.42 1.34 15 25 H 0.07 1.03 9.07 97.61 0.89 1.92 15 26 H 0.14 3.16 6.01 -52.48 -0.32 2.84 15 27 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 LS Contribution 256.71 15.07 3.87 3.87 Total: -1.00 -26.44 256.71 -8.74 -35.17 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -1.15 Total: 0.90 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -2.79 Total: -29.43 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.77 Total: -20.29 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.21 Total: 15.91 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -5.23 Total: -6.13 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.44 -8.74 -35.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307102496.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.014 kcal (2) G-P(sol) polarization free energy of solvation -26.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds