Wall clock time and date at job start Mon Mar 30 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40546 * 120.00656 * 2 1 4 4 C 1.45442 * 129.09423 * 359.97438 * 3 2 1 5 5 C 1.32740 * 114.71001 * 179.97438 * 4 3 2 6 6 S 1.76203 * 124.29558 * 179.97438 * 5 4 3 7 7 S 1.75252 * 111.41349 * 359.97438 * 5 4 3 8 8 C 1.40255 * 119.04241 * 179.97438 * 3 2 1 9 9 C 1.40334 * 120.14710 * 0.03548 * 8 3 2 10 10 C 1.35784 * 120.85456 * 359.66688 * 9 8 3 11 11 C 1.39939 * 120.00737 * 179.97438 * 2 1 3 12 12 C 1.41257 * 120.06847 * 359.97438 * 11 2 1 13 13 H 1.07991 * 120.00061 * 333.49074 * 12 11 2 14 14 C 1.39851 * 119.99801 * 153.49471 * 12 11 2 15 15 N 1.30904 * 119.99930 * 335.13376 * 14 12 11 16 16 Si 1.86796 * 120.00113 * 155.13334 * 14 12 11 17 17 H 1.48499 * 109.47438 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47308 * 299.99688 * 16 14 12 19 19 H 1.48501 * 109.47243 * 59.99982 * 16 14 12 20 20 H 1.08995 * 109.46951 * 270.01622 * 1 2 3 21 21 H 1.08997 * 109.47456 * 30.01749 * 1 2 3 22 22 H 1.09002 * 109.47184 * 150.01962 * 1 2 3 23 23 H 1.07994 * 122.64039 * 359.96610 * 4 3 2 24 24 H 1.34500 * 103.00338 * 180.02562 * 6 5 4 25 25 H 1.08001 * 119.57380 * 179.97438 * 9 8 3 26 26 H 1.08007 * 119.94639 * 180.28753 * 10 9 8 27 27 H 0.97008 * 119.99986 * 354.20384 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.2171 0.0000 4 6 1.6911 2.5758 -0.0005 5 6 2.6197 3.5244 0.0002 6 16 2.2740 5.2521 -0.0009 7 16 4.2331 2.8402 0.0023 8 6 3.6122 1.1935 0.0005 9 6 4.2965 -0.0317 0.0003 10 6 3.6184 -1.2081 0.0064 11 6 2.2069 -1.2118 0.0005 12 6 1.5022 -2.4361 0.0016 13 1 0.5077 -2.4863 0.4195 14 6 2.0926 -3.5831 -0.5383 15 7 3.0275 -3.4718 -1.4479 16 14 1.5471 -5.2741 0.0382 17 1 2.3206 -6.3164 -0.6831 18 1 1.7872 -5.4005 1.4982 19 1 0.0995 -5.4496 -0.2424 20 1 -0.3633 0.0003 1.0276 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5135 23 1 0.6337 2.7956 -0.0015 24 1 3.4996 5.8060 -0.0003 25 1 5.3765 -0.0391 0.0003 26 1 4.1599 -2.1426 0.0108 27 1 3.2520 -2.5997 -1.8084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307112887.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:26 Heat of formation + Delta-G solvation = 19.023911 kcal Electronic energy + Delta-G solvation = -13398.460866 eV Core-core repulsion = 11144.696687 eV Total energy + Delta-G solvation = -2253.764180 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.52060 -35.28106 -33.00529 -31.74070 -28.58017 -26.25545 -24.96831 -22.80580 -20.82776 -20.05698 -17.93651 -17.30758 -16.31936 -15.37066 -14.51344 -14.24437 -13.88573 -13.55425 -13.24589 -12.42797 -12.17155 -11.97864 -11.91115 -11.70922 -11.29427 -11.22350 -10.65106 -10.53649 -10.46310 -10.23274 -9.93330 -9.50155 -9.18603 -8.55447 -8.36268 -7.43265 -7.23199 -6.84475 -4.56350 1.47509 1.51489 1.90672 2.46661 2.75990 2.86513 3.06022 3.10966 3.21336 3.29491 3.91643 4.34673 5.22552 5.70218 5.80836 6.09119 6.15376 6.29849 6.41527 6.54966 6.55797 6.78413 6.89230 7.23659 7.28132 7.37412 7.59676 7.61918 7.96424 8.03718 8.52722 8.68437 9.89740 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.046774 B = 0.005955 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.480074 B = 4700.722767 C = 5189.153872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.177 4.177 3 C -0.023 4.023 4 C -0.071 4.071 5 C -0.179 4.179 6 S -0.061 6.061 7 S 0.012 5.988 8 C -0.226 4.226 9 C -0.063 4.063 10 C -0.168 4.168 11 C 0.099 3.901 12 C -0.507 4.507 13 H 0.083 0.917 14 C 0.038 3.962 15 N -0.792 5.792 16 Si 1.065 2.935 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.274 1.274 20 H 0.044 0.956 21 H 0.041 0.959 22 H 0.063 0.937 23 H 0.138 0.862 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 6.553 1.872 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.182 4.182 3 C -0.031 4.031 4 C -0.110 4.110 5 C -0.405 4.405 6 S 0.100 5.900 7 S 0.269 5.731 8 C -0.342 4.342 9 C -0.085 4.085 10 C -0.189 4.189 11 C 0.095 3.905 12 C -0.535 4.535 13 H 0.101 0.899 14 C -0.185 4.185 15 N -0.414 5.414 16 Si 0.888 3.112 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.199 1.199 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.155 0.845 24 H 0.038 0.962 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.096 6.562 1.650 6.767 hybrid contribution -0.213 0.551 0.142 0.608 sum -0.117 7.114 1.793 7.337 Atomic orbital electron populations 1.20360 0.92772 1.00837 0.99925 1.19485 0.94284 0.90141 1.14263 1.18630 0.91222 0.91533 1.01669 1.20778 0.98866 0.90487 1.00844 1.24466 1.00558 0.98247 1.17246 1.85471 1.12392 0.96768 1.95322 1.83433 1.04817 1.00647 1.84237 1.21713 0.95555 0.94131 1.22804 1.19709 0.97397 0.90390 1.01006 1.20970 0.94783 0.96260 1.06870 1.17357 0.91266 0.92316 0.89583 1.20558 1.03932 0.93554 1.35445 0.89865 1.27090 0.92798 1.05699 0.92887 1.70511 1.22746 1.31364 1.16819 0.83625 0.77018 0.73291 0.77256 1.19797 1.19863 1.19945 0.93735 0.94044 0.91802 0.84452 0.96225 0.88538 0.86627 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.22 36.01 0.33 -1.31 15 2 C -0.18 -4.11 6.00 -103.11 -0.62 -4.73 15 3 C -0.02 -0.51 5.96 -105.40 -0.63 -1.14 15 4 C -0.07 -1.37 9.70 -38.60 -0.37 -1.75 15 5 C -0.18 -3.26 6.63 28.85 0.19 -3.06 15 6 S -0.06 -0.89 26.13 -107.50 -2.81 -3.70 15 7 S 0.01 0.23 23.21 -107.50 -2.50 -2.26 15 8 C -0.23 -5.06 6.50 -38.04 -0.25 -5.31 15 9 C -0.06 -1.41 9.98 -39.67 -0.40 -1.81 15 10 C -0.17 -4.05 7.86 -39.36 -0.31 -4.36 15 11 C 0.10 2.45 5.26 -107.01 -0.56 1.89 15 12 C -0.51 -12.44 8.00 -37.83 -0.30 -12.74 15 13 H 0.08 1.97 6.92 -52.49 -0.36 1.61 15 14 C 0.04 0.89 4.93 -17.34 -0.09 0.81 15 15 N -0.79 -19.82 12.35 55.54 0.69 -19.14 15 16 Si 1.07 20.23 30.00 -169.99 -5.10 15.13 15 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.04 0.74 7.25 -51.93 -0.38 0.36 15 22 H 0.06 1.29 6.75 -51.93 -0.35 0.94 15 23 H 0.14 2.36 7.53 -52.49 -0.40 1.96 15 24 H 0.07 0.99 9.07 97.61 0.89 1.87 15 25 H 0.10 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.12 2.82 6.55 -52.48 -0.34 2.48 15 27 H 0.30 7.71 6.70 -40.82 -0.27 7.44 15 LS Contribution 260.02 15.07 3.92 3.92 Total: -1.00 -25.27 260.02 -9.66 -34.93 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -0.86 Total: 4.64 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -3.00 Total: -33.51 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.69 Total: -19.14 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.10 Total: 15.13 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -5.30 Total: -5.96 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.27 -9.66 -34.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307112887.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.957 kcal (2) G-P(sol) polarization free energy of solvation -25.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds