Wall clock time and date at job start Mon Mar 30 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40546 * 120.00656 * 2 1 4 4 C 1.45442 * 129.09423 * 359.97438 * 3 2 1 5 5 C 1.32740 * 114.71001 * 179.97438 * 4 3 2 6 6 S 1.76203 * 124.29558 * 179.97438 * 5 4 3 7 7 S 1.75252 * 111.41349 * 359.97438 * 5 4 3 8 8 C 1.40255 * 119.04241 * 179.97438 * 3 2 1 9 9 C 1.40334 * 120.14710 * 0.03548 * 8 3 2 10 10 C 1.35784 * 120.85456 * 359.66688 * 9 8 3 11 11 C 1.39939 * 120.00737 * 179.97438 * 2 1 3 12 12 C 1.41257 * 120.06847 * 359.97438 * 11 2 1 13 13 H 1.07991 * 120.00061 * 333.49074 * 12 11 2 14 14 C 1.39851 * 119.99801 * 153.49471 * 12 11 2 15 15 N 1.30904 * 119.99930 * 335.13376 * 14 12 11 16 16 Si 1.86796 * 120.00113 * 155.13334 * 14 12 11 17 17 H 1.48499 * 109.47438 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47308 * 299.99688 * 16 14 12 19 19 H 1.48501 * 109.47243 * 59.99982 * 16 14 12 20 20 H 1.08995 * 109.46951 * 270.01622 * 1 2 3 21 21 H 1.08997 * 109.47456 * 30.01749 * 1 2 3 22 22 H 1.09002 * 109.47184 * 150.01962 * 1 2 3 23 23 H 1.07994 * 122.64039 * 359.96610 * 4 3 2 24 24 H 1.34500 * 103.00338 * 180.02562 * 6 5 4 25 25 H 1.08001 * 119.57380 * 179.97438 * 9 8 3 26 26 H 1.08007 * 119.94639 * 180.28753 * 10 9 8 27 27 H 0.97008 * 119.99986 * 354.20384 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.2171 0.0000 4 6 1.6911 2.5758 -0.0005 5 6 2.6197 3.5244 0.0002 6 16 2.2740 5.2521 -0.0009 7 16 4.2331 2.8402 0.0023 8 6 3.6122 1.1935 0.0005 9 6 4.2965 -0.0317 0.0003 10 6 3.6184 -1.2081 0.0064 11 6 2.2069 -1.2118 0.0005 12 6 1.5022 -2.4361 0.0016 13 1 0.5077 -2.4863 0.4195 14 6 2.0926 -3.5831 -0.5383 15 7 3.0275 -3.4718 -1.4479 16 14 1.5471 -5.2741 0.0382 17 1 2.3206 -6.3164 -0.6831 18 1 1.7872 -5.4005 1.4982 19 1 0.0995 -5.4496 -0.2424 20 1 -0.3633 0.0003 1.0276 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5135 23 1 0.6337 2.7956 -0.0015 24 1 3.4996 5.8060 -0.0003 25 1 5.3765 -0.0391 0.0003 26 1 4.1599 -2.1426 0.0108 27 1 3.2520 -2.5997 -1.8084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307112887.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:26 Heat of formation + Delta-G solvation = 7.852672 kcal Electronic energy + Delta-G solvation = -13398.945287 eV Core-core repulsion = 11144.696687 eV Total energy + Delta-G solvation = -2254.248601 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23847 -36.96233 -34.70868 -33.45731 -30.28845 -27.96330 -26.72386 -24.41204 -22.51484 -21.73199 -19.61356 -18.79532 -17.78013 -17.01085 -16.17740 -15.90006 -15.42992 -15.16453 -14.87878 -14.11147 -13.75983 -13.59209 -13.52925 -13.35290 -12.90187 -12.74578 -12.27046 -12.04177 -11.93699 -11.71656 -11.59554 -11.20871 -10.91673 -10.20123 -9.94548 -9.27002 -8.79274 -8.39411 -6.41444 -0.13373 0.20964 0.45614 0.68096 1.11458 1.42593 1.54746 1.63131 1.66442 1.82315 2.34191 2.59216 3.41190 4.05963 4.17257 4.44373 4.58035 4.65802 4.79562 4.84369 4.99199 5.13658 5.19822 5.45350 5.52361 5.60509 5.74411 5.83520 6.15917 6.22982 6.70329 6.88532 8.02421 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.046774 B = 0.005955 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.480074 B = 4700.722767 C = 5189.153872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.035 4.035 4 C -0.088 4.088 5 C -0.175 4.175 6 S -0.020 6.020 7 S 0.042 5.958 8 C -0.250 4.250 9 C -0.068 4.068 10 C -0.187 4.187 11 C 0.073 3.927 12 C -0.533 4.533 13 H 0.085 0.915 14 C 0.005 3.995 15 N -0.816 5.816 16 Si 1.114 2.886 17 H -0.275 1.275 18 H -0.264 1.264 19 H -0.255 1.255 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.161 0.839 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 8.369 2.356 8.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.198 4.198 3 C -0.043 4.043 4 C -0.127 4.127 5 C -0.402 4.402 6 S 0.143 5.857 7 S 0.298 5.702 8 C -0.365 4.365 9 C -0.090 4.090 10 C -0.208 4.208 11 C 0.069 3.931 12 C -0.561 4.561 13 H 0.103 0.897 14 C -0.212 4.212 15 N -0.439 5.439 16 Si 0.932 3.068 17 H -0.200 1.200 18 H -0.189 1.189 19 H -0.180 1.180 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.178 0.822 24 H 0.050 0.950 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.631 8.415 2.136 8.705 hybrid contribution 0.081 0.296 0.004 0.307 sum -0.551 8.711 2.140 8.987 Atomic orbital electron populations 1.20338 0.90745 1.01404 1.00799 1.19916 0.96071 0.90141 1.13717 1.19014 0.91473 0.92859 1.00941 1.20827 1.00295 0.89096 1.02485 1.24906 0.99762 1.00854 1.14687 1.85419 1.12868 0.92885 1.94542 1.83260 1.05180 0.97902 1.83837 1.22115 0.96346 0.95907 1.22168 1.19905 0.98307 0.90387 1.00428 1.20928 0.94955 0.96386 1.08573 1.17702 0.91801 0.93365 0.90221 1.20724 1.04378 0.94284 1.36746 0.89717 1.28405 0.91958 1.08932 0.91894 1.70620 1.24574 1.30211 1.18492 0.83023 0.77561 0.69088 0.77164 1.19985 1.18853 1.17958 0.92562 0.91880 0.92737 0.82182 0.94970 0.86922 0.88007 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.99 9.22 71.24 0.66 -2.34 15 2 C -0.19 -9.07 6.00 -18.89 -0.11 -9.19 15 3 C -0.03 -1.54 5.96 -20.37 -0.12 -1.66 15 4 C -0.09 -3.22 9.70 22.95 0.22 -3.00 15 5 C -0.18 -5.87 6.63 66.65 0.44 -5.43 15 6 S -0.02 -0.49 26.13 -56.49 -1.48 -1.96 15 7 S 0.04 1.50 23.21 -56.49 -1.31 0.19 15 8 C -0.25 -11.05 6.50 23.27 0.15 -10.90 15 9 C -0.07 -3.13 9.98 22.21 0.22 -2.91 15 10 C -0.19 -9.42 7.86 22.42 0.18 -9.24 15 11 C 0.07 3.74 5.26 -21.41 -0.11 3.62 15 12 C -0.53 -26.93 8.00 23.40 0.19 -26.74 15 13 H 0.08 4.10 6.92 -2.92 -0.02 4.08 15 14 C 0.00 0.22 4.93 85.22 0.42 0.64 15 15 N -0.82 -42.49 12.35 21.81 0.27 -42.22 15 16 Si 1.11 41.03 30.00 68.60 2.06 43.09 15 17 H -0.28 -10.11 7.11 99.48 0.71 -9.40 15 18 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 19 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.06 2.15 7.25 -2.39 -0.02 2.13 15 22 H 0.05 2.21 6.75 -2.39 -0.02 2.19 15 23 H 0.16 5.00 7.53 -2.91 -0.02 4.98 15 24 H 0.09 1.92 9.07 73.35 0.67 2.58 15 25 H 0.11 4.64 8.06 -2.91 -0.02 4.62 15 26 H 0.10 5.27 6.55 -2.91 -0.02 5.25 15 27 H 0.28 15.42 6.70 -92.70 -0.62 14.80 15 Total: -1.00 -54.85 260.02 3.70 -51.15 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 2.03 Total: 16.88 kcal Atomic # 6 Polarization: -69.26 SS G_CDS: 2.13 Total: -67.13 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.27 Total: -42.22 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.06 Total: 43.09 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.79 Total: -1.77 kcal Total: -54.85 3.70 -51.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307112887.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.008 kcal (2) G-P(sol) polarization free energy of solvation -54.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds