Wall clock time and date at job start Mon Mar 30 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40036 * 119.61301 * 2 1 4 4 S 1.76130 * 129.71396 * 0.02562 * 3 2 1 5 5 C 1.75219 * 92.27119 * 179.97438 * 4 3 2 6 6 C 1.31541 * 111.56985 * 0.02562 * 5 4 3 7 7 C 1.40279 * 120.74647 * 180.02562 * 3 2 1 8 8 C 1.40382 * 119.80430 * 359.71829 * 7 3 2 9 9 C 1.39842 * 120.37156 * 0.56283 * 8 7 3 10 10 C 1.40983 * 120.42296 * 179.71978 * 9 8 7 11 11 H 1.07994 * 120.00290 * 154.57759 * 10 9 8 12 12 C 1.39848 * 119.99575 * 334.29998 * 10 9 8 13 13 N 1.30942 * 119.99871 * 342.80631 * 12 10 9 14 14 Si 1.86798 * 119.99851 * 162.80471 * 12 10 9 15 15 H 1.48500 * 109.47183 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47398 * 120.00193 * 14 12 10 17 17 H 1.48503 * 109.47313 * 240.00076 * 14 12 10 18 18 C 1.37764 * 119.61478 * 180.02562 * 2 1 3 19 19 S 1.76196 * 120.42932 * 359.96022 * 18 2 1 20 20 H 1.09001 * 109.47016 * 269.97747 * 1 2 3 21 21 H 1.08998 * 109.47515 * 29.98099 * 1 2 3 22 22 H 1.09002 * 109.47083 * 149.98039 * 1 2 3 23 23 H 1.08006 * 124.21539 * 179.97438 * 5 4 3 24 24 H 1.07999 * 122.52863 * 180.02562 * 6 5 4 25 25 H 1.08002 * 119.81451 * 180.30137 * 8 7 3 26 26 H 0.97002 * 119.99578 * 179.97438 * 13 12 10 27 27 H 1.34502 * 103.00116 * 270.02232 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.2175 0.0000 4 16 1.5772 2.8653 0.0006 5 6 3.1908 3.5484 0.0009 6 6 4.1130 2.6104 0.0000 7 6 3.6015 1.2452 -0.0005 8 6 4.3232 0.0411 0.0049 9 6 3.6519 -1.1856 -0.0010 10 6 4.3757 -2.3955 -0.0015 11 1 3.9265 -3.2936 0.3959 12 6 5.6732 -2.4338 -0.5218 13 7 6.0951 -1.4692 -1.3004 14 14 6.8044 -3.8610 -0.1061 15 1 6.0935 -4.8128 0.7850 16 1 7.2029 -4.5571 -1.3558 17 1 8.0160 -3.3480 0.5826 18 6 2.1878 -1.1977 -0.0005 19 16 1.3080 -2.7243 -0.0002 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 3.4019 4.6076 0.0009 24 1 5.1694 2.8347 0.0005 25 1 5.4030 0.0623 0.0094 26 1 6.9952 -1.4957 -1.6610 27 1 1.1573 -2.9863 1.3104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307123877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:39 Heat of formation + Delta-G solvation = 15.440434 kcal Electronic energy + Delta-G solvation = -13527.462275 eV Core-core repulsion = 11273.542704 eV Total energy + Delta-G solvation = -2253.919571 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72730 -36.48756 -35.55330 -32.74219 -30.36349 -27.67171 -27.28509 -23.98304 -22.44957 -21.24005 -18.82063 -18.64865 -17.89090 -17.01781 -16.36144 -15.84909 -15.26822 -14.79779 -14.74253 -14.09824 -13.70605 -13.52143 -13.42959 -13.20549 -12.92279 -12.66176 -12.45358 -12.12064 -11.93066 -11.69328 -11.31616 -11.23611 -10.88048 -10.01351 -9.16175 -8.76170 -8.62231 -8.44592 -6.37191 -0.04358 0.79388 0.92367 1.11684 1.35605 1.39501 1.44948 1.54663 1.61644 2.17655 2.21184 2.60272 3.48900 4.02421 4.11579 4.42478 4.68304 4.75609 4.80199 4.89825 5.04269 5.14068 5.19330 5.24170 5.53088 5.62375 5.77202 5.94870 6.09052 6.50510 6.75851 6.80581 8.19832 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.009047 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.961813 B = 3094.232428 C = 4216.717851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.018 3.982 3 C -0.270 4.270 4 S 0.040 5.960 5 C -0.174 4.174 6 C -0.144 4.144 7 C -0.046 4.046 8 C -0.185 4.185 9 C 0.113 3.887 10 C -0.454 4.454 11 H 0.092 0.908 12 C 0.037 3.963 13 N -0.805 5.805 14 Si 0.985 3.015 15 H -0.256 1.256 16 H -0.263 1.263 17 H -0.263 1.263 18 C -0.224 4.224 19 S -0.111 6.111 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.195 0.805 24 H 0.146 0.854 25 H 0.110 0.890 26 H 0.294 0.706 27 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 3.797 2.031 5.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.011 3.989 3 C -0.385 4.385 4 S 0.298 5.702 5 C -0.307 4.307 6 C -0.175 4.175 7 C -0.052 4.052 8 C -0.209 4.209 9 C 0.106 3.894 10 C -0.483 4.483 11 H 0.110 0.890 12 C -0.181 4.181 13 N -0.429 5.429 14 Si 0.805 3.195 15 H -0.179 1.179 16 H -0.187 1.187 17 H -0.187 1.187 18 C -0.339 4.339 19 S 0.047 5.953 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.212 0.788 24 H 0.164 0.836 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -4.831 3.737 1.650 6.326 hybrid contribution 2.662 -0.343 1.013 2.869 sum -2.168 3.394 2.662 4.828 Atomic orbital electron populations 1.20966 0.89626 1.03667 1.02777 1.19492 0.96078 0.89701 0.93625 1.22019 0.95843 0.96484 1.24164 1.83100 1.07879 0.96050 1.83179 1.25185 0.95321 1.03847 1.06379 1.21186 1.01066 0.90449 1.04818 1.19658 0.92439 0.94122 0.98964 1.20983 0.98610 0.89999 1.11299 1.18858 0.89917 0.93777 0.86832 1.19942 0.98380 0.96224 1.33719 0.89017 1.26874 0.99321 1.00155 0.91779 1.69931 1.19210 1.32853 1.20878 0.85102 0.77426 0.77510 0.79475 1.17945 1.18720 1.18739 1.22124 0.94888 0.93422 1.23438 1.84804 1.71985 1.28559 1.09998 0.90665 0.91290 0.89246 0.78810 0.83629 0.87236 0.89533 0.98810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.99 9.40 71.24 0.67 -3.32 15 2 C 0.02 0.81 5.92 -19.54 -0.12 0.69 15 3 C -0.27 -12.07 6.31 23.20 0.15 -11.93 15 4 S 0.04 1.39 22.44 -56.49 -1.27 0.13 15 5 C -0.17 -5.65 10.99 67.27 0.74 -4.91 15 6 C -0.14 -5.55 10.37 23.67 0.25 -5.31 15 7 C -0.05 -2.17 6.01 -20.31 -0.12 -2.29 15 8 C -0.19 -9.74 8.73 23.18 0.20 -9.54 15 9 C 0.11 6.02 5.70 -20.09 -0.11 5.91 15 10 C -0.45 -23.53 8.54 23.33 0.20 -23.33 15 11 H 0.09 4.62 7.14 -2.91 -0.02 4.60 15 12 C 0.04 1.76 5.14 85.22 0.44 2.20 15 13 N -0.80 -40.29 11.01 21.82 0.24 -40.05 15 14 Si 0.98 36.45 29.59 68.60 2.03 38.48 15 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 16 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 17 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 18 C -0.22 -10.88 6.31 24.29 0.15 -10.73 15 19 S -0.11 -4.64 22.67 -56.49 -1.28 -5.92 15 20 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.07 2.22 7.52 -2.39 -0.02 2.21 15 22 H 0.09 3.02 6.74 -2.39 -0.02 3.00 15 23 H 0.19 4.49 8.06 -2.91 -0.02 4.47 15 24 H 0.15 5.00 8.06 -2.91 -0.02 4.98 15 25 H 0.11 5.93 6.19 -2.91 -0.02 5.91 15 26 H 0.29 13.13 8.30 -92.71 -0.77 12.36 15 27 H 0.05 1.86 9.07 73.35 0.67 2.52 15 Total: -1.00 -57.36 259.67 4.04 -53.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.88 Total: 16.58 kcal Atomic # 6 Polarization: -64.98 SS G_CDS: 2.44 Total: -62.54 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.24 Total: -40.05 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.55 Total: -5.79 kcal Total: -57.36 4.04 -53.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307123877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.759 kcal (2) G-P(sol) polarization free energy of solvation -57.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds