Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.31723 * 124.26488 * 2 1 4 4 C 1.45600 * 114.89390 * 179.80397 * 3 2 1 5 5 C 1.40665 * 129.05604 * 180.16623 * 4 3 2 6 6 C 1.39963 * 120.27525 * 180.28837 * 5 4 3 7 7 C 1.41269 * 120.01298 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99958 * 334.38279 * 7 6 5 9 9 C 1.39793 * 119.99481 * 154.38908 * 7 6 5 10 10 N 1.30924 * 120.00369 * 343.10145 * 9 7 6 11 11 Si 1.86801 * 119.99784 * 163.10719 * 9 7 6 12 12 H 1.48502 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47057 * 119.99682 * 11 9 7 14 14 H 1.48500 * 109.47179 * 239.99623 * 11 9 7 15 15 C 1.41018 * 119.96506 * 0.02562 * 6 5 4 16 16 C 1.37342 * 119.89721 * 0.02562 * 15 6 5 17 17 S 1.76205 * 119.72085 * 180.02562 * 16 15 6 18 18 C 1.39943 * 111.77835 * 0.46392 * 4 3 2 19 19 S 1.75266 * 124.26559 * 180.29321 * 2 1 3 20 20 H 1.09004 * 109.46965 * 179.73231 * 1 2 3 21 21 H 1.08995 * 109.47589 * 299.72857 * 1 2 3 22 22 H 1.09003 * 109.47088 * 59.73365 * 1 2 3 23 23 H 1.08003 * 122.55666 * 359.96498 * 3 2 1 24 24 H 1.07996 * 119.85931 * 0.29047 * 5 4 3 25 25 H 0.96997 * 120.00579 * 179.97438 * 10 9 7 26 26 H 1.08000 * 120.05011 * 180.02562 * 15 6 5 27 27 H 1.34500 * 102.99915 * 269.97691 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2485 1.0886 0.0000 4 6 3.6851 0.8515 0.0045 5 6 4.7374 1.7850 0.0089 6 6 6.0674 1.3489 0.0068 7 6 7.1199 2.2912 0.0117 8 1 6.9598 3.2818 -0.3877 9 6 8.3688 1.9412 0.5334 10 7 8.4848 0.8897 1.3047 11 14 9.8721 2.9740 0.1300 12 1 9.4769 4.0990 -0.7552 13 1 10.4541 3.5125 1.3857 14 1 10.8806 2.1314 -0.5615 15 6 6.3561 -0.0313 -0.0003 16 6 5.3309 -0.9452 -0.0056 17 16 5.6969 -2.6688 -0.0137 18 6 3.9858 -0.5152 -0.0025 19 16 2.4937 -1.4484 -0.0074 20 1 -0.3633 -1.0277 -0.0048 21 1 -0.3634 0.5096 0.8923 22 1 -0.3633 0.5180 -0.8876 23 1 1.8234 2.0815 -0.0006 24 1 4.5182 2.8424 0.0139 25 1 9.3513 0.6466 1.6664 26 1 7.3819 -0.3693 -0.0015 27 1 5.7603 -2.9584 -1.3256 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307162042.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = 23.766041 kcal Electronic energy + Delta-G solvation = -13257.284278 eV Core-core repulsion = 11003.725733 eV Total energy + Delta-G solvation = -2253.558545 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.14850 -35.38158 -33.41204 -30.35108 -30.03150 -26.40959 -25.34907 -22.01431 -21.16191 -19.49550 -17.79585 -16.68597 -16.14734 -15.31669 -14.61985 -14.41524 -13.79381 -13.55177 -13.08888 -12.78721 -12.41959 -12.28718 -11.86908 -11.51237 -11.20791 -11.00319 -10.87989 -10.76137 -10.25510 -10.09219 -9.81826 -9.52844 -9.12701 -8.42957 -7.48364 -7.40087 -7.05964 -6.83167 -4.54083 1.73582 2.06200 2.42845 2.56342 2.88865 2.98289 3.00457 3.04395 3.26240 3.62432 3.79817 4.35686 5.21746 5.34055 5.55844 5.74032 5.94289 5.97760 6.25019 6.51217 6.55983 6.71032 6.85261 7.01077 7.12526 7.28882 7.46533 7.67028 7.89640 8.26262 8.58298 8.64134 9.98385 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.007188 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.030938 B = 3894.467378 C = 4738.915654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.184 4.184 3 C -0.121 4.121 4 C -0.042 4.042 5 C -0.193 4.193 6 C 0.104 3.896 7 C -0.453 4.453 8 H 0.085 0.915 9 C 0.073 3.927 10 N -0.787 5.787 11 Si 0.913 3.087 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.270 1.270 15 C -0.061 4.061 16 C -0.063 4.063 17 S -0.156 6.156 18 C -0.193 4.193 19 S 0.041 5.959 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.103 0.897 25 H 0.286 0.714 26 H 0.141 0.859 27 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -1.109 -2.031 6.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.299 4.299 3 C -0.153 4.153 4 C -0.050 4.050 5 C -0.216 4.216 6 C 0.098 3.902 7 C -0.482 4.482 8 H 0.103 0.897 9 C -0.146 4.146 10 N -0.412 5.412 11 Si 0.737 3.263 12 H -0.183 1.183 13 H -0.197 1.197 14 H -0.195 1.195 15 C -0.084 4.084 16 C -0.180 4.180 17 S 0.002 5.998 18 C -0.311 4.311 19 S 0.302 5.698 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.146 0.854 24 H 0.121 0.879 25 H 0.098 0.902 26 H 0.158 0.842 27 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -6.000 -3.701 -1.667 7.244 hybrid contribution 0.932 2.761 -1.039 3.094 sum -5.069 -0.939 -2.706 5.822 Atomic orbital electron populations 1.20269 0.88913 1.02193 1.02138 1.23688 0.99102 0.97134 1.09984 1.20817 0.92079 0.98221 1.04173 1.18918 0.92039 0.92062 1.01969 1.20894 0.90989 0.96635 1.13070 1.17428 0.91810 0.91810 0.89115 1.19572 0.94165 0.99701 1.34782 0.89683 1.25970 1.00798 0.95335 0.92513 1.69809 1.26893 1.23166 1.21321 0.86173 0.80275 0.80472 0.79403 1.18265 1.19730 1.19515 1.21912 0.97811 0.92499 0.96154 1.20084 0.92825 0.92636 1.12434 1.85558 1.94474 1.09128 1.10614 1.22067 0.94670 0.95371 1.18990 1.83540 0.96052 1.08090 1.82158 0.91933 0.91250 0.91351 0.85422 0.87863 0.90250 0.84182 0.97693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.32 36.00 0.37 -0.61 15 2 C -0.18 -3.24 6.37 -36.19 -0.23 -3.47 15 3 C -0.12 -2.33 10.21 -38.53 -0.39 -2.72 15 4 C -0.04 -0.96 6.02 -105.41 -0.64 -1.60 15 5 C -0.19 -4.61 9.83 -38.02 -0.37 -4.98 15 6 C 0.10 2.64 5.55 -107.05 -0.59 2.05 15 7 C -0.45 -11.23 9.02 -37.85 -0.34 -11.57 15 8 H 0.09 2.01 7.90 -52.48 -0.41 1.60 15 9 C 0.07 1.71 5.14 -17.36 -0.09 1.63 15 10 N -0.79 -19.25 10.96 55.54 0.61 -18.64 15 11 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 15 12 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 15 C -0.06 -1.52 8.35 -38.85 -0.32 -1.85 15 16 C -0.06 -1.51 6.13 -38.78 -0.24 -1.74 15 17 S -0.16 -3.23 25.44 -107.50 -2.73 -5.96 15 18 C -0.19 -4.46 6.38 -37.82 -0.24 -4.70 15 19 S 0.04 0.80 22.82 -107.50 -2.45 -1.66 15 20 H 0.06 0.74 8.13 -51.93 -0.42 0.32 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.13 2.11 8.06 -52.48 -0.42 1.69 15 24 H 0.10 2.28 8.06 -52.49 -0.42 1.86 15 25 H 0.29 6.34 8.30 -40.82 -0.34 6.00 15 26 H 0.14 3.58 6.18 -52.49 -0.32 3.26 15 27 H 0.06 1.13 9.07 97.61 0.89 2.02 15 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -26.07 265.43 -9.80 -35.87 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -1.10 Total: 3.42 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -3.09 Total: -29.57 kcal Atomic # 7 Polarization: -19.25 SS G_CDS: 0.61 Total: -18.64 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -5.19 Total: -7.62 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.07 -9.80 -35.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307162042.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.640 kcal (2) G-P(sol) polarization free energy of solvation -26.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds