Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.31723 * 124.26488 * 2 1 4 4 C 1.45600 * 114.89390 * 179.80397 * 3 2 1 5 5 C 1.40665 * 129.05604 * 180.16623 * 4 3 2 6 6 C 1.39963 * 120.27525 * 180.28837 * 5 4 3 7 7 C 1.41269 * 120.01298 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99958 * 334.38279 * 7 6 5 9 9 C 1.39793 * 119.99481 * 154.38908 * 7 6 5 10 10 N 1.30924 * 120.00369 * 343.10145 * 9 7 6 11 11 Si 1.86801 * 119.99784 * 163.10719 * 9 7 6 12 12 H 1.48502 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47057 * 119.99682 * 11 9 7 14 14 H 1.48500 * 109.47179 * 239.99623 * 11 9 7 15 15 C 1.41018 * 119.96506 * 0.02562 * 6 5 4 16 16 C 1.37342 * 119.89721 * 0.02562 * 15 6 5 17 17 S 1.76205 * 119.72085 * 180.02562 * 16 15 6 18 18 C 1.39943 * 111.77835 * 0.46392 * 4 3 2 19 19 S 1.75266 * 124.26559 * 180.29321 * 2 1 3 20 20 H 1.09004 * 109.46965 * 179.73231 * 1 2 3 21 21 H 1.08995 * 109.47589 * 299.72857 * 1 2 3 22 22 H 1.09003 * 109.47088 * 59.73365 * 1 2 3 23 23 H 1.08003 * 122.55666 * 359.96498 * 3 2 1 24 24 H 1.07996 * 119.85931 * 0.29047 * 5 4 3 25 25 H 0.96997 * 120.00579 * 179.97438 * 10 9 7 26 26 H 1.08000 * 120.05011 * 180.02562 * 15 6 5 27 27 H 1.34500 * 102.99915 * 269.97691 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2485 1.0886 0.0000 4 6 3.6851 0.8515 0.0045 5 6 4.7374 1.7850 0.0089 6 6 6.0674 1.3489 0.0068 7 6 7.1199 2.2912 0.0117 8 1 6.9598 3.2818 -0.3877 9 6 8.3688 1.9412 0.5334 10 7 8.4848 0.8897 1.3047 11 14 9.8721 2.9740 0.1300 12 1 9.4769 4.0990 -0.7552 13 1 10.4541 3.5125 1.3857 14 1 10.8806 2.1314 -0.5615 15 6 6.3561 -0.0313 -0.0003 16 6 5.3309 -0.9452 -0.0056 17 16 5.6969 -2.6688 -0.0137 18 6 3.9858 -0.5152 -0.0025 19 16 2.4937 -1.4484 -0.0074 20 1 -0.3633 -1.0277 -0.0048 21 1 -0.3634 0.5096 0.8923 22 1 -0.3633 0.5180 -0.8876 23 1 1.8234 2.0815 -0.0006 24 1 4.5182 2.8424 0.0139 25 1 9.3513 0.6466 1.6664 26 1 7.3819 -0.3693 -0.0015 27 1 5.7603 -2.9584 -1.3256 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307162042.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = 11.742130 kcal Electronic energy + Delta-G solvation = -13257.805674 eV Core-core repulsion = 11003.725733 eV Total energy + Delta-G solvation = -2254.079941 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86566 -36.99558 -35.09471 -32.01893 -31.67577 -27.99477 -27.01558 -23.71270 -22.88449 -21.05826 -19.50311 -18.44126 -17.81267 -16.99934 -16.29005 -16.02388 -15.41399 -14.91595 -14.65329 -14.35178 -13.93583 -13.74796 -13.27330 -13.08222 -12.87568 -12.64182 -12.52401 -12.30863 -11.89377 -11.67905 -11.45786 -11.24693 -10.84444 -10.15373 -9.14952 -9.11409 -8.79718 -8.50679 -6.40214 0.07133 0.35528 0.77259 0.93583 1.30240 1.36732 1.40929 1.55286 1.63359 1.94586 2.18567 2.58814 3.48284 3.88322 4.40793 4.49683 4.54762 4.78226 4.81906 4.84915 5.01445 5.17763 5.21225 5.27604 5.35844 5.46980 5.76744 5.86612 6.08128 6.40810 6.75481 6.79988 8.24618 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.007188 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.030938 B = 3894.467378 C = 4738.915654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.052 4.052 5 C -0.211 4.211 6 C 0.079 3.921 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.036 3.964 10 N -0.819 5.819 11 Si 0.986 3.014 12 H -0.256 1.256 13 H -0.265 1.265 14 H -0.264 1.264 15 C -0.087 4.087 16 C -0.077 4.077 17 S -0.140 6.140 18 C -0.223 4.223 19 S 0.059 5.941 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.155 0.845 24 H 0.111 0.889 25 H 0.294 0.706 26 H 0.127 0.873 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -1.048 -2.307 7.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.277 4.277 3 C -0.176 4.176 4 C -0.061 4.061 5 C -0.233 4.233 6 C 0.074 3.926 7 C -0.513 4.513 8 H 0.104 0.896 9 C -0.180 4.180 10 N -0.445 5.445 11 Si 0.806 3.194 12 H -0.179 1.179 13 H -0.190 1.190 14 H -0.189 1.189 15 C -0.110 4.110 16 C -0.193 4.193 17 S 0.018 5.982 18 C -0.341 4.341 19 S 0.320 5.680 20 H 0.095 0.905 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.172 0.828 24 H 0.129 0.871 25 H 0.105 0.895 26 H 0.144 0.856 27 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.528 -3.643 -1.941 8.585 hybrid contribution 1.224 2.640 -0.953 3.062 sum -6.303 -1.003 -2.894 7.008 Atomic orbital electron populations 1.20471 0.84959 1.03857 1.04227 1.24324 1.01437 0.95443 1.06449 1.20969 0.90242 1.00204 1.06228 1.19376 0.93879 0.91926 1.00894 1.21087 0.91104 0.97435 1.13686 1.17759 0.92821 0.92353 0.89691 1.19822 0.95357 0.99943 1.36195 0.89577 1.26803 1.03187 0.96396 0.91654 1.69863 1.27992 1.24623 1.21999 0.85088 0.76261 0.78735 0.79280 1.17930 1.18970 1.18903 1.21801 0.97593 0.92968 0.98621 1.20346 0.93249 0.94163 1.11583 1.85333 1.94522 1.06720 1.11627 1.22483 0.95906 0.96644 1.19024 1.83393 0.94186 1.08597 1.81863 0.90525 0.89135 0.89057 0.82785 0.87096 0.89533 0.85572 0.96279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.32 71.23 0.74 -0.89 15 2 C -0.16 -5.18 6.37 24.98 0.16 -5.02 15 3 C -0.15 -5.32 10.21 23.46 0.24 -5.08 15 4 C -0.05 -2.40 6.02 -20.37 -0.12 -2.52 15 5 C -0.21 -10.35 9.83 23.28 0.23 -10.12 15 6 C 0.08 4.20 5.55 -21.43 -0.12 4.09 15 7 C -0.48 -24.90 9.02 23.39 0.21 -24.69 15 8 H 0.09 4.23 7.90 -2.91 -0.02 4.20 15 9 C 0.04 1.72 5.14 85.20 0.44 2.15 15 10 N -0.82 -41.30 10.96 21.80 0.24 -41.06 15 11 Si 0.99 36.35 29.59 68.60 2.03 38.38 15 12 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 13 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 14 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 15 C -0.09 -4.54 8.35 22.74 0.19 -4.35 15 16 C -0.08 -3.75 6.13 22.79 0.14 -3.61 15 17 S -0.14 -5.78 25.44 -56.49 -1.44 -7.21 15 18 C -0.22 -10.31 6.38 23.41 0.15 -10.16 15 19 S 0.06 2.19 22.82 -56.49 -1.29 0.90 15 20 H 0.08 1.44 8.13 -2.38 -0.02 1.42 15 21 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.15 4.70 8.06 -2.91 -0.02 4.68 15 24 H 0.11 5.05 8.06 -2.91 -0.02 5.03 15 25 H 0.29 13.31 8.30 -92.71 -0.77 12.55 15 26 H 0.13 6.80 6.18 -2.91 -0.02 6.78 15 27 H 0.07 2.76 9.07 73.35 0.67 3.43 15 Total: -1.00 -57.46 265.43 3.66 -53.80 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.87 Total: 15.40 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 2.25 Total: -60.20 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.24 Total: -41.06 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.73 Total: -6.31 kcal Total: -57.46 3.66 -53.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307162042.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.542 kcal (2) G-P(sol) polarization free energy of solvation -57.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds