Wall clock time and date at job start Mon Mar 30 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41022 * 120.05429 * 2 1 4 4 C 1.41264 * 120.01537 * 359.95815 * 3 2 1 5 5 H 1.08005 * 120.00471 * 333.67481 * 4 3 2 6 6 C 1.39802 * 120.00162 * 153.67750 * 4 3 2 7 7 N 1.30937 * 119.99499 * 343.15055 * 6 4 3 8 8 Si 1.86798 * 120.00183 * 163.14832 * 6 4 3 9 9 H 1.48501 * 109.46963 * 90.00212 * 8 6 4 10 10 H 1.48496 * 109.46982 * 209.99903 * 8 6 4 11 11 H 1.48493 * 109.47052 * 330.00025 * 8 6 4 12 12 C 1.39954 * 119.96750 * 179.97438 * 3 2 1 13 13 C 1.40670 * 120.27991 * 0.27982 * 12 3 2 14 14 C 1.45595 * 129.06034 * 180.37966 * 13 12 3 15 15 C 1.31724 * 114.89237 * 179.60368 * 14 13 12 16 16 S 1.75270 * 111.46904 * 359.72557 * 15 14 13 17 17 C 1.39945 * 119.14958 * 359.43116 * 13 12 3 18 18 C 1.37342 * 120.04841 * 179.97438 * 2 1 3 19 19 S 1.76196 * 119.72719 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.47450 * 89.99474 * 1 2 3 21 21 H 1.09002 * 109.47653 * 209.99786 * 1 2 3 22 22 H 1.08996 * 109.47203 * 329.99711 * 1 2 3 23 23 H 0.96998 * 119.99347 * 180.02562 * 7 6 4 24 24 H 1.08004 * 119.86265 * 180.02562 * 12 3 2 25 25 H 1.07997 * 122.54995 * 359.30943 * 14 13 12 26 26 H 1.07998 * 124.26360 * 179.74220 * 15 14 13 27 27 H 1.34501 * 102.99771 * 90.00091 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2133 1.2206 0.0000 4 6 1.5084 2.4449 -0.0009 5 1 0.5127 2.4945 -0.4163 6 6 2.0997 3.5923 0.5359 7 7 3.1405 3.4852 1.3232 8 14 1.4052 5.2782 0.1299 9 1 0.3725 5.6427 1.1329 10 1 2.4980 6.2833 0.1569 11 1 0.7930 5.2487 -1.2226 12 6 3.6128 1.2185 0.0005 13 6 4.3203 0.0026 -0.0048 14 6 5.7588 -0.2218 0.0022 15 6 6.1224 -1.4879 0.0025 16 16 4.7317 -2.5547 0.0021 17 6 3.6067 -1.2012 0.0014 18 6 2.1947 -1.1888 0.0005 19 16 1.3078 -2.7113 0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 3.5505 4.2813 1.6960 24 1 4.1520 2.1543 0.0010 25 1 6.4733 0.5880 0.0020 26 1 7.1481 -1.8259 0.0033 27 1 1.1560 -2.9730 -1.3100 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307162209.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:50 Heat of formation + Delta-G solvation = 15.844976 kcal Electronic energy + Delta-G solvation = -13554.699208 eV Core-core repulsion = 11300.797180 eV Total energy + Delta-G solvation = -2253.902029 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99281 -36.77453 -35.23519 -31.84031 -31.56693 -28.02305 -26.64507 -23.85924 -22.79696 -21.21294 -19.17516 -18.55415 -17.87801 -17.02888 -16.31131 -15.83219 -15.15401 -14.90419 -14.76391 -14.41836 -13.69206 -13.63260 -13.16868 -12.97640 -12.89365 -12.72198 -12.47987 -12.25227 -11.80319 -11.56021 -11.50346 -11.17453 -10.90735 -10.04966 -9.11559 -8.98794 -8.65515 -8.49471 -6.32219 0.08537 0.39114 0.83827 1.00137 1.32221 1.38971 1.42691 1.54593 1.63662 1.98512 2.21200 2.64119 3.51508 4.00963 4.40153 4.51340 4.60477 4.83887 4.90695 4.97225 5.05190 5.16967 5.25264 5.30475 5.56358 5.58720 5.76593 5.95927 6.08420 6.53560 6.84918 6.85783 8.31283 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.025268 B = 0.008549 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.852825 B = 3274.372378 C = 4291.784766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.110 4.110 3 C 0.073 3.927 4 C -0.478 4.478 5 H 0.089 0.911 6 C 0.036 3.964 7 N -0.823 5.823 8 Si 0.981 3.019 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.257 1.257 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.133 4.133 15 C -0.192 4.192 16 S 0.060 5.940 17 C -0.213 4.213 18 C -0.077 4.077 19 S -0.127 6.127 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.289 0.711 24 H 0.111 0.889 25 H 0.147 0.853 26 H 0.195 0.805 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -4.261 -2.330 4.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.068 3.932 4 C -0.507 4.507 5 H 0.107 0.893 6 C -0.180 4.180 7 N -0.449 5.449 8 Si 0.802 3.198 9 H -0.187 1.187 10 H -0.195 1.195 11 H -0.181 1.181 12 C -0.168 4.168 13 C -0.089 4.089 14 C -0.164 4.164 15 C -0.325 4.325 16 S 0.319 5.681 17 C -0.330 4.330 18 C -0.193 4.193 19 S 0.031 5.969 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.129 0.871 25 H 0.165 0.835 26 H 0.212 0.788 27 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.561 -6.522 -1.952 6.831 hybrid contribution 0.598 3.194 -0.983 3.395 sum 1.158 -3.328 -2.934 4.585 Atomic orbital electron populations 1.20711 0.89736 1.03084 1.01733 1.20529 0.96968 0.91394 1.02624 1.17615 0.91951 0.92614 0.91032 1.19737 1.02792 0.92838 1.35363 0.89256 1.26734 0.94418 1.04934 0.91874 1.69908 1.19758 1.33281 1.21974 0.85209 0.78788 0.75853 0.79986 1.18659 1.19478 1.18108 1.21280 0.94217 0.94881 1.06442 1.19560 0.93115 0.93282 1.02960 1.21126 0.93390 0.97849 1.04083 1.25263 1.03408 0.96017 1.07859 1.83354 0.94891 1.07957 1.81893 1.22557 0.96058 0.96640 1.17733 1.20136 0.92240 0.94652 1.12276 1.85142 1.73977 1.25979 1.11760 0.91828 0.89993 0.91594 0.90028 0.87128 0.83524 0.78813 0.96174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.74 8.92 71.24 0.64 -3.11 15 2 C -0.11 -5.17 5.94 -19.39 -0.12 -5.29 15 3 C 0.07 3.80 5.54 -21.44 -0.12 3.68 15 4 C -0.48 -23.98 8.08 23.39 0.19 -23.79 15 5 H 0.09 4.22 6.88 -2.91 -0.02 4.20 15 6 C 0.04 1.71 5.13 85.20 0.44 2.14 15 7 N -0.82 -41.44 11.00 21.80 0.24 -41.20 15 8 Si 0.98 36.22 29.59 68.60 2.03 38.25 15 9 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 10 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 11 H -0.26 -9.30 7.11 99.48 0.71 -8.59 15 12 C -0.15 -7.58 8.73 23.28 0.20 -7.38 15 13 C -0.08 -3.84 6.03 -20.37 -0.12 -3.97 15 14 C -0.13 -5.17 10.39 23.46 0.24 -4.93 15 15 C -0.19 -6.34 11.01 67.11 0.74 -5.60 15 16 S 0.06 2.18 22.87 -56.49 -1.29 0.88 15 17 C -0.21 -9.65 6.38 23.41 0.15 -9.50 15 18 C -0.08 -3.45 6.13 22.79 0.14 -3.31 15 19 S -0.13 -4.65 23.56 -56.49 -1.33 -5.98 15 20 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.08 2.92 6.72 -2.39 -0.02 2.90 15 22 H 0.07 2.61 6.77 -2.39 -0.02 2.59 15 23 H 0.29 13.19 8.30 -92.71 -0.77 12.42 15 24 H 0.11 5.95 6.20 -2.91 -0.02 5.93 15 25 H 0.15 5.03 8.06 -2.91 -0.02 5.01 15 26 H 0.19 4.62 8.06 -2.91 -0.02 4.60 15 27 H 0.07 2.50 9.07 73.35 0.67 3.17 15 Total: -1.00 -56.06 258.81 3.91 -52.16 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.88 Total: 16.92 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 2.38 Total: -61.04 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.24 Total: -41.20 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -2.62 Total: -5.10 kcal Total: -56.06 3.91 -52.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307162209.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.000 kcal (2) G-P(sol) polarization free energy of solvation -56.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds