Wall clock time and date at job start Mon Mar 30 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38416 * 119.24470 * 2 1 4 4 C 1.37441 * 121.12778 * 180.02562 * 3 2 1 5 5 C 1.40408 * 120.11756 * 359.95904 * 4 3 2 6 6 C 1.40505 * 120.42103 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00134 * 154.29774 * 6 5 4 8 8 C 1.39848 * 119.99947 * 334.29641 * 6 5 4 9 9 N 1.30943 * 119.99902 * 343.29959 * 8 6 5 10 10 Si 1.86798 * 120.00378 * 163.29836 * 8 6 5 11 11 H 1.48497 * 109.47312 * 89.99712 * 10 8 6 12 12 H 1.48494 * 109.47271 * 210.00305 * 10 8 6 13 13 H 1.48504 * 109.46637 * 330.00115 * 10 8 6 14 14 C 1.47959 * 119.16048 * 0.02562 * 5 4 3 15 15 C 1.39506 * 129.12366 * 179.97438 * 14 5 4 16 16 C 1.34174 * 115.60810 * 179.97438 * 15 14 5 17 17 S 1.76205 * 124.73585 * 180.02562 * 16 15 14 18 18 S 1.75509 * 110.53213 * 0.02562 * 16 15 14 19 19 C 1.39193 * 119.24823 * 179.73180 * 2 1 3 20 20 H 1.08993 * 109.47465 * 89.99282 * 1 2 3 21 21 H 1.09005 * 109.46893 * 329.99181 * 1 2 3 22 22 H 1.09003 * 109.47118 * 209.99961 * 1 2 3 23 23 H 1.07999 * 119.43515 * 359.97438 * 3 2 1 24 24 H 1.07995 * 119.93511 * 179.97438 * 4 3 2 25 25 H 0.96998 * 119.99956 * 180.02562 * 9 8 6 26 26 H 1.08003 * 122.19941 * 359.97438 * 15 14 5 27 27 H 1.40992 * 99.99841 * 90.00271 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1832 1.2077 0.0000 4 6 3.5569 1.2529 -0.0005 5 6 4.3009 0.0622 -0.0002 6 6 5.7054 0.1009 -0.0002 7 1 6.2685 -0.7265 0.4056 8 6 6.3743 1.2109 -0.5258 9 7 5.7376 2.0524 -1.3011 10 14 8.1761 1.4933 -0.1218 11 1 9.0229 0.8148 -1.1355 12 1 8.4632 2.9502 -0.1318 13 1 8.4744 0.9392 1.2233 14 6 3.5872 -1.2339 0.0001 15 6 4.1107 -2.5270 0.0000 16 6 3.2067 -3.5186 0.0009 17 16 3.6004 -5.2361 0.0016 18 16 1.5774 -2.8662 0.0013 19 6 2.1871 -1.2145 0.0057 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 0.8900 0.5140 22 1 -0.3633 -0.8900 0.5138 23 1 1.6218 2.1304 -0.0004 24 1 4.0647 2.2060 -0.0009 25 1 6.2016 2.8221 -1.6659 26 1 5.1738 -2.7176 -0.0008 27 1 3.6557 -5.4740 1.3902 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307171316.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:12 Heat of formation + Delta-G solvation = 22.660757 kcal Electronic energy + Delta-G solvation = -13390.779958 eV Core-core repulsion = 11137.173484 eV Total energy + Delta-G solvation = -2253.606474 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.19250 -34.62386 -34.19329 -30.99517 -28.31957 -27.51111 -24.19342 -22.67959 -20.87978 -19.30719 -18.13800 -16.83619 -15.77983 -15.15228 -14.66257 -14.33271 -13.83385 -13.21509 -13.01944 -12.73935 -12.24273 -11.85769 -11.78651 -11.62673 -11.34930 -10.97980 -10.84811 -10.65883 -10.52778 -9.87183 -9.77990 -9.58686 -9.40486 -8.26515 -7.65974 -7.42207 -7.20452 -6.82462 -4.64149 1.46408 2.19465 2.52326 2.69326 2.84933 2.88399 2.96060 3.00649 3.12208 3.56162 3.60487 4.21237 5.27434 5.89724 5.93669 6.21850 6.24413 6.32214 6.37005 6.51539 6.63862 6.81713 6.91705 7.05877 7.17058 7.55864 7.62271 7.73983 7.85251 8.20131 8.37539 8.53891 9.65655 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.008562 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.585602 B = 3269.625788 C = 4545.990212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.209 4.209 3 C -0.048 4.048 4 C -0.189 4.189 5 C 0.157 3.843 6 C -0.413 4.413 7 H 0.089 0.911 8 C 0.070 3.930 9 N -0.757 5.757 10 Si 0.919 3.081 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.255 1.255 14 C -0.209 4.209 15 C 0.017 3.983 16 C -0.289 4.289 17 S -0.099 6.099 18 S 0.029 5.971 19 C -0.046 4.046 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.291 0.709 26 H 0.130 0.870 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -1.932 1.889 2.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.218 4.218 3 C -0.069 4.069 4 C -0.211 4.211 5 C 0.152 3.848 6 C -0.440 4.440 7 H 0.107 0.893 8 C -0.153 4.153 9 N -0.378 5.378 10 Si 0.742 3.258 11 H -0.188 1.188 12 H -0.195 1.195 13 H -0.179 1.179 14 C -0.216 4.216 15 C -0.016 4.016 16 C -0.515 4.515 17 S 0.055 5.945 18 S 0.289 5.711 19 C -0.163 4.163 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.116 0.884 24 H 0.142 0.858 25 H 0.103 0.897 26 H 0.148 0.852 27 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.226 -3.407 1.492 4.335 hybrid contribution 1.923 1.737 0.945 2.758 sum -0.303 -1.670 2.438 2.971 Atomic orbital electron populations 1.20440 0.93250 1.00465 1.00187 1.18353 0.93847 0.90716 1.18878 1.20455 0.94591 0.94933 0.96970 1.21041 0.92367 0.98209 1.09479 1.18514 0.92425 0.88582 0.85318 1.19736 0.91863 1.02203 1.30150 0.89253 1.26167 1.02184 0.94441 0.92542 1.69868 1.39182 1.10101 1.18656 0.86094 0.80199 0.78804 0.80711 1.18789 1.19512 1.17890 1.18973 0.91431 0.93043 1.18149 1.20221 0.99120 0.90855 0.91416 1.24009 0.98013 0.97347 1.32111 1.86205 1.92195 1.05013 1.11072 1.83513 1.07947 0.97948 1.81714 1.22225 0.96043 0.95144 1.02893 0.93458 0.93137 0.93608 0.88428 0.85806 0.89740 0.85211 0.96648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.83 36.00 0.35 -1.21 15 2 C -0.21 -4.60 5.91 -104.20 -0.62 -5.22 15 3 C -0.05 -1.06 9.57 -39.81 -0.38 -1.44 15 4 C -0.19 -4.53 8.65 -39.06 -0.34 -4.87 15 5 C 0.16 3.92 5.75 -104.24 -0.60 3.32 15 6 C -0.41 -9.82 8.81 -38.13 -0.34 -10.16 15 7 H 0.09 2.02 7.53 -52.49 -0.40 1.63 15 8 C 0.07 1.55 5.15 -17.33 -0.09 1.46 15 9 N -0.76 -17.29 10.97 55.54 0.61 -16.68 15 10 Si 0.92 16.42 29.59 -169.99 -5.03 11.39 15 11 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 12 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 13 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 14 C -0.21 -5.07 6.02 -104.77 -0.63 -5.70 15 15 C 0.02 0.37 9.69 -40.54 -0.39 -0.02 15 16 C -0.29 -6.06 6.72 29.30 0.20 -5.86 15 17 S -0.10 -1.75 26.18 -107.50 -2.81 -4.56 15 18 S 0.03 0.59 22.51 -107.50 -2.42 -1.83 15 19 C -0.05 -1.07 6.28 -38.55 -0.24 -1.32 15 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.05 0.81 8.07 -51.93 -0.42 0.39 15 22 H 0.04 0.80 7.52 -51.93 -0.39 0.41 15 23 H 0.10 1.88 8.06 -52.49 -0.42 1.45 15 24 H 0.12 2.97 6.19 -52.49 -0.32 2.65 15 25 H 0.29 5.94 8.30 -40.82 -0.34 5.60 15 26 H 0.13 2.71 7.73 -52.48 -0.41 2.31 15 27 H 0.07 1.11 9.55 96.90 0.93 2.04 15 LS Contribution 264.00 15.07 3.98 3.98 Total: -1.00 -24.86 264.00 -9.74 -34.59 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -0.99 Total: 4.12 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -3.07 Total: -31.02 kcal Atomic # 7 Polarization: -17.29 SS G_CDS: 0.61 Total: -16.68 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -5.23 Total: -6.39 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.86 -9.74 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307171316.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.255 kcal (2) G-P(sol) polarization free energy of solvation -24.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds