Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75233 * 124.24599 * 2 1 4 4 C 1.75988 * 92.35011 * 179.97438 * 3 2 1 5 5 C 1.40535 * 130.19010 * 180.02562 * 4 3 2 6 6 C 1.35650 * 120.83508 * 179.97438 * 5 4 3 7 7 C 1.41137 * 120.09678 * 359.97438 * 6 5 4 8 8 C 1.41233 * 120.06587 * 180.02562 * 7 6 5 9 9 H 1.07992 * 120.00406 * 334.36680 * 8 7 6 10 10 C 1.39797 * 119.99964 * 154.36744 * 8 7 6 11 11 N 1.30943 * 120.00043 * 343.21358 * 10 8 7 12 12 Si 1.86793 * 120.00227 * 163.21476 * 10 8 7 13 13 H 1.48504 * 109.47189 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47277 * 119.99975 * 12 10 8 15 15 H 1.48501 * 109.47325 * 240.00028 * 12 10 8 16 16 C 1.40004 * 119.86682 * 0.24849 * 7 6 5 17 17 C 1.40134 * 109.67152 * 359.97438 * 4 3 2 18 18 C 1.32257 * 124.25442 * 179.97438 * 2 1 3 19 19 S 1.76197 * 122.64922 * 359.97438 * 18 2 1 20 20 H 1.09003 * 109.46960 * 270.02122 * 1 2 3 21 21 H 1.08998 * 109.47609 * 30.02292 * 1 2 3 22 22 H 1.09006 * 109.47210 * 150.02497 * 1 2 3 23 23 H 1.07994 * 119.57905 * 0.02562 * 5 4 3 24 24 H 1.07996 * 119.95179 * 179.97438 * 6 5 4 25 25 H 0.97000 * 120.00477 * 180.02562 * 11 10 8 26 26 H 1.07991 * 120.00602 * 179.74056 * 16 7 6 27 27 H 1.34500 * 103.00011 * 270.02427 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4931 1.4485 0.0000 4 6 3.9873 0.5186 0.0008 5 6 5.3245 0.9509 0.0017 6 6 6.3443 0.0565 0.0027 7 6 6.0713 -1.3282 0.0034 8 6 7.1337 -2.2589 0.0050 9 1 8.0958 -1.9808 -0.3989 10 6 6.9397 -3.5401 0.5295 11 7 5.9120 -3.7818 1.3042 12 14 8.1465 -4.9074 0.1254 13 1 9.2126 -4.3799 -0.7637 14 1 8.7552 -5.4174 1.3802 15 1 7.4309 -6.0121 -0.5623 16 6 4.7453 -1.7774 -0.0021 17 6 3.6906 -0.8509 0.0016 18 6 2.2514 -1.0932 0.0005 19 16 1.5602 -2.7139 0.0019 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 5.5428 2.0085 0.0023 24 1 7.3667 0.4045 0.0029 25 1 5.7776 -4.6707 1.6684 26 1 4.5338 -2.8364 -0.0058 27 1 1.4415 -2.9911 1.3126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307173264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = 26.663124 kcal Electronic energy + Delta-G solvation = -13389.977222 eV Core-core repulsion = 11136.544304 eV Total energy + Delta-G solvation = -2253.432918 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.10627 -35.30621 -33.51242 -30.53131 -29.51504 -26.47856 -25.26770 -22.10468 -20.78183 -19.85389 -17.40746 -16.73830 -16.32349 -15.24255 -14.63621 -14.44749 -13.73827 -13.55520 -12.95973 -12.61181 -12.41861 -12.16085 -11.86864 -11.47762 -11.23099 -11.13497 -10.88017 -10.64415 -10.15744 -9.81639 -9.77893 -9.57602 -9.16312 -8.35832 -7.53250 -7.41232 -6.85120 -6.84812 -4.43628 1.47142 1.90768 2.52128 2.63918 2.89178 3.03854 3.06302 3.09966 3.21229 3.62497 3.87535 4.48541 5.15760 5.50346 5.56584 5.72984 6.00205 6.02930 6.22282 6.46429 6.58265 6.87005 6.95731 7.09234 7.38322 7.46410 7.67968 7.87076 8.09517 8.47534 8.75174 8.77832 10.09143 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.007912 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.290298 B = 3538.179493 C = 4459.220018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.117 4.117 3 S 0.033 5.967 4 C -0.238 4.238 5 C -0.063 4.063 6 C -0.181 4.181 7 C 0.107 3.893 8 C -0.454 4.454 9 H 0.082 0.918 10 C 0.075 3.925 11 N -0.786 5.786 12 Si 0.910 3.090 13 H -0.259 1.259 14 H -0.274 1.274 15 H -0.270 1.270 16 C -0.138 4.138 17 C -0.033 4.033 18 C -0.100 4.100 19 S -0.113 6.113 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.282 0.718 26 H 0.134 0.866 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 2.851 -1.254 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.236 4.236 3 S 0.293 5.707 4 C -0.353 4.353 5 C -0.086 4.086 6 C -0.202 4.202 7 C 0.104 3.896 8 C -0.483 4.483 9 H 0.100 0.900 10 C -0.144 4.144 11 N -0.411 5.411 12 Si 0.734 3.266 13 H -0.183 1.183 14 H -0.200 1.200 15 H -0.195 1.195 16 C -0.161 4.161 17 C -0.040 4.040 18 C -0.227 4.227 19 S 0.043 5.957 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.107 0.893 23 H 0.113 0.887 24 H 0.122 0.878 25 H 0.093 0.907 26 H 0.151 0.849 27 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.059 3.353 -1.329 7.927 hybrid contribution 1.277 -1.260 1.087 2.098 sum -5.782 2.093 -0.242 6.154 Atomic orbital electron populations 1.20530 0.88089 1.03579 1.02566 1.24043 0.99422 0.95960 1.04156 1.83291 0.97554 1.08041 1.81768 1.21768 0.95378 0.94848 1.23352 1.19639 0.89896 0.97619 1.01423 1.20782 0.96853 0.93614 1.08915 1.17467 0.92719 0.91148 0.88275 1.19567 0.98252 0.95877 1.34629 0.89991 1.25921 0.96011 0.99854 0.92599 1.69859 1.26649 1.23069 1.21515 0.86232 0.80754 0.80363 0.79268 1.18301 1.19985 1.19466 1.21267 0.89962 0.98602 1.06243 1.18922 0.90662 0.92594 1.01815 1.20888 0.95048 0.94226 1.12489 1.85282 1.81449 1.17765 1.11253 0.91139 0.91385 0.89334 0.88653 0.87784 0.90694 0.84864 0.96823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.95 36.01 0.36 -0.87 15 2 C -0.12 -2.16 6.39 -36.24 -0.23 -2.39 15 3 S 0.03 0.63 23.19 -107.50 -2.49 -1.87 15 4 C -0.24 -5.45 6.51 -38.00 -0.25 -5.69 15 5 C -0.06 -1.41 9.99 -39.64 -0.40 -1.81 15 6 C -0.18 -4.27 9.70 -39.41 -0.38 -4.65 15 7 C 0.11 2.80 5.55 -107.00 -0.59 2.20 15 8 C -0.45 -11.61 9.03 -37.86 -0.34 -11.96 15 9 H 0.08 1.99 7.90 -52.49 -0.41 1.58 15 10 C 0.07 1.83 5.14 -17.35 -0.09 1.74 15 11 N -0.79 -19.96 10.97 55.54 0.61 -19.36 15 12 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 15 13 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 14 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 16 C -0.14 -3.61 8.50 -38.11 -0.32 -3.94 15 17 C -0.03 -0.80 6.02 -105.30 -0.63 -1.43 15 18 C -0.10 -2.12 6.21 -38.43 -0.24 -2.36 15 19 S -0.11 -2.12 24.48 -107.50 -2.63 -4.75 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.09 1.16 7.27 -51.93 -0.38 0.78 15 23 H 0.10 1.85 8.06 -52.49 -0.42 1.42 15 24 H 0.10 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 26 H 0.13 3.60 6.10 -52.49 -0.32 3.28 15 27 H 0.07 1.24 9.07 97.61 0.89 2.12 15 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -26.87 263.57 -9.74 -36.62 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -1.05 Total: 3.36 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -3.12 Total: -31.15 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.61 Total: -19.36 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -5.12 Total: -6.61 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.87 -9.74 -36.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307173264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.281 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds