Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.69985 * 124.03571 * 2 1 4 4 C 1.75776 * 93.22033 * 180.17670 * 3 2 1 5 5 C 1.39181 * 110.22004 * 359.82896 * 4 3 2 6 6 C 1.40705 * 119.29039 * 180.02562 * 5 4 3 7 7 C 1.37511 * 120.47870 * 359.97438 * 6 5 4 8 8 C 1.38500 * 120.34038 * 359.97438 * 7 6 5 9 9 C 1.38419 * 120.08918 * 0.02562 * 8 7 6 10 10 S 1.76203 * 119.89125 * 179.97438 * 9 8 7 11 11 C 1.36449 * 124.04007 * 179.85019 * 2 1 3 12 12 C 1.40811 * 123.29855 * 0.04235 * 11 2 1 13 13 H 1.07991 * 120.00332 * 37.59079 * 12 11 2 14 14 C 1.39688 * 119.99949 * 217.86351 * 12 11 2 15 15 N 1.31097 * 119.99571 * 19.21542 * 14 12 11 16 16 Si 1.86791 * 120.00200 * 199.21691 * 14 12 11 17 17 H 1.48494 * 109.47444 * 89.99990 * 16 14 12 18 18 H 1.48499 * 109.47202 * 210.00049 * 16 14 12 19 19 H 1.48505 * 109.47231 * 329.99792 * 16 14 12 20 20 H 1.08997 * 109.47684 * 264.69437 * 1 2 3 21 21 H 1.09003 * 109.47268 * 24.70135 * 1 2 3 22 22 H 1.09007 * 109.46854 * 144.69751 * 1 2 3 23 23 H 1.08006 * 119.76500 * 179.97438 * 6 5 4 24 24 H 1.07999 * 119.82588 * 180.02562 * 7 6 5 25 25 H 1.07991 * 119.95577 * 180.02562 * 8 7 6 26 26 H 1.34503 * 103.00113 * 270.02629 * 10 9 8 27 27 H 0.96998 * 119.99673 * 174.65235 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4584 1.4087 0.0000 4 6 3.9680 0.5082 -0.0054 5 6 3.7121 -0.8599 -0.0032 6 6 4.7917 -1.7622 -0.0063 7 6 6.0869 -1.3001 -0.0120 8 6 6.3441 0.0608 -0.0153 9 6 5.2962 0.9652 -0.0123 10 16 5.6294 2.6954 -0.0158 11 6 2.2708 -1.1307 0.0030 12 6 1.7282 -2.4301 0.0055 13 1 0.8367 -2.6441 -0.5651 14 6 2.3400 -3.4409 0.7506 15 7 3.1633 -3.1317 1.7228 16 14 1.9851 -5.2331 0.3617 17 1 2.9620 -5.7245 -0.6429 18 1 2.1018 -6.0413 1.6020 19 1 0.6093 -5.3584 -0.1831 20 1 -0.3634 -0.0950 1.0232 21 1 -0.3634 0.9336 -0.4295 22 1 -0.3633 -0.8388 -0.5939 23 1 4.6019 -2.8254 -0.0042 24 1 6.9076 -2.0020 -0.0148 25 1 7.3636 0.4169 -0.0201 26 1 5.6924 2.9941 1.2942 27 1 3.5277 -3.8291 2.2900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307203408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = 14.857321 kcal Electronic energy + Delta-G solvation = -13677.343530 eV Core-core repulsion = 11423.398674 eV Total energy + Delta-G solvation = -2253.944856 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16244 -36.84734 -34.55555 -31.87841 -31.54687 -29.00609 -26.56097 -23.82231 -22.91242 -21.21772 -19.32349 -18.07324 -17.93601 -16.92637 -16.27885 -15.99157 -15.59507 -15.06380 -14.66031 -14.51238 -13.79220 -13.43625 -13.35020 -13.12333 -12.92279 -12.60433 -12.41300 -12.13439 -12.02958 -11.51862 -11.37423 -11.18442 -10.81940 -10.11183 -9.14065 -9.04721 -8.65094 -8.31827 -6.27137 -0.03747 0.27233 0.71069 1.10956 1.26991 1.39898 1.50373 1.70866 1.82025 2.00321 2.24660 2.80615 3.26110 4.05670 4.17479 4.45423 4.50594 4.73546 4.77900 4.87944 4.95729 5.14131 5.24559 5.30700 5.44950 5.49760 5.67169 6.02742 6.10077 6.41980 6.77850 6.96299 8.39708 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.009443 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.459714 B = 2964.299117 C = 3907.897633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 C -0.410 4.410 3 S 0.097 5.903 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.024 4.024 7 C -0.156 4.156 8 C -0.054 4.054 9 C -0.114 4.114 10 S -0.119 6.119 11 C 0.090 3.910 12 C -0.490 4.490 13 H 0.076 0.924 14 C 0.049 3.951 15 N -0.832 5.832 16 Si 0.969 3.031 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.264 1.264 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.115 0.885 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.074 0.926 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 2.465 -1.859 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.526 4.526 3 S 0.361 5.639 4 C -0.247 4.247 5 C -0.091 4.091 6 C -0.044 4.044 7 C -0.178 4.178 8 C -0.076 4.076 9 C -0.232 4.232 10 S 0.039 5.961 11 C 0.081 3.919 12 C -0.523 4.523 13 H 0.094 0.906 14 C -0.166 4.166 15 N -0.459 5.459 16 Si 0.791 3.209 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.188 1.188 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.133 0.867 24 H 0.174 0.826 25 H 0.183 0.817 26 H 0.039 0.961 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.000 4.811 -1.939 7.205 hybrid contribution -0.348 -3.277 1.193 3.505 sum 4.651 1.534 -0.745 4.954 Atomic orbital electron populations 1.19616 0.88626 1.00339 0.99924 1.23483 1.00429 0.96115 1.32561 1.81567 0.92651 1.08434 1.81243 1.23151 0.97729 0.97597 1.06268 1.19718 0.95220 0.91735 1.02411 1.21326 0.91663 0.99292 0.92078 1.21255 0.96253 0.95961 1.04372 1.21656 0.98594 0.92227 0.95157 1.20583 0.92587 0.95815 1.14233 1.85415 1.94304 1.04557 1.11867 1.17673 0.88614 0.94110 0.91521 1.19025 1.11737 0.93043 1.28464 0.90589 1.26454 0.92460 1.04592 0.93045 1.70000 1.25919 1.37019 1.12996 0.85398 0.79880 0.76789 0.78842 1.18424 1.19576 1.18759 0.94085 0.92517 0.92939 0.86718 0.82600 0.81739 0.96136 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.12 9.89 71.23 0.70 -0.42 15 2 C -0.41 -20.23 6.30 25.27 0.16 -20.07 15 3 S 0.10 4.30 22.51 -56.49 -1.27 3.03 15 4 C -0.13 -5.92 6.32 23.04 0.15 -5.77 15 5 C -0.08 -3.99 5.55 -20.25 -0.11 -4.10 15 6 C -0.02 -1.06 8.45 22.70 0.19 -0.87 15 7 C -0.16 -5.51 10.01 22.16 0.22 -5.29 15 8 C -0.05 -1.82 9.76 22.38 0.22 -1.60 15 9 C -0.11 -4.42 6.14 22.86 0.14 -4.28 15 10 S -0.12 -3.84 25.44 -56.49 -1.44 -5.28 15 11 C 0.09 4.80 5.38 -20.87 -0.11 4.69 15 12 C -0.49 -25.79 8.47 23.25 0.20 -25.59 15 13 H 0.08 3.96 7.25 -2.92 -0.02 3.94 15 14 C 0.05 2.38 4.14 85.15 0.35 2.73 15 15 N -0.83 -41.91 10.74 21.79 0.23 -41.67 15 16 Si 0.97 37.29 29.61 68.60 2.03 39.32 15 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 18 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 20 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.05 2.22 7.27 -2.38 -0.02 2.20 15 23 H 0.11 5.28 6.04 -2.91 -0.02 5.26 15 24 H 0.16 4.26 8.06 -2.91 -0.02 4.24 15 25 H 0.17 4.14 8.06 -2.92 -0.02 4.12 15 26 H 0.07 2.27 9.07 73.35 0.67 2.93 15 27 H 0.29 13.16 8.31 -92.71 -0.77 12.39 15 Total: -1.00 -57.40 260.36 3.54 -53.86 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.87 Total: 11.32 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 2.11 Total: -60.58 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.23 Total: -41.67 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.71 Total: -2.25 kcal Total: -57.40 3.54 -53.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307203408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.721 kcal (2) G-P(sol) polarization free energy of solvation -57.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds