Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40675 * 119.85919 * 2 1 4 4 C 1.45594 * 129.05924 * 359.97374 * 3 2 1 5 5 C 1.31718 * 114.89097 * 180.02562 * 4 3 2 6 6 S 1.75268 * 111.47281 * 359.97438 * 5 4 3 7 7 C 1.39933 * 119.15434 * 180.02562 * 3 2 1 8 8 C 1.41211 * 120.15298 * 359.97307 * 7 3 2 9 9 S 1.76195 * 119.72128 * 180.02562 * 8 7 3 10 10 C 1.37343 * 120.55271 * 0.27357 * 8 7 3 11 11 C 1.39956 * 119.86342 * 180.02562 * 2 1 3 12 12 C 1.41262 * 120.01759 * 0.02562 * 11 2 1 13 13 H 1.08003 * 120.00356 * 25.72208 * 12 11 2 14 14 C 1.39802 * 120.00359 * 205.72969 * 12 11 2 15 15 N 1.30925 * 119.99481 * 15.32656 * 14 12 11 16 16 Si 1.86795 * 120.00196 * 195.33096 * 14 12 11 17 17 H 1.48502 * 109.47019 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47235 * 119.99354 * 16 14 12 19 19 H 1.48495 * 109.47363 * 239.99577 * 16 14 12 20 20 H 1.08998 * 109.46813 * 90.00502 * 1 2 3 21 21 H 1.08995 * 109.46707 * 210.00214 * 1 2 3 22 22 H 1.08997 * 109.47190 * 330.00237 * 1 2 3 23 23 H 1.08004 * 122.55489 * 0.02562 * 4 3 2 24 24 H 1.08004 * 124.26647 * 180.02562 * 5 4 3 25 25 H 1.34498 * 103.00188 * 90.00166 * 9 8 7 26 26 H 1.08001 * 120.04846 * 179.70330 * 10 8 7 27 27 H 0.97007 * 119.99666 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.2200 0.0000 4 6 1.6837 2.5785 -0.0005 5 6 2.5991 3.5256 -0.0009 6 16 4.2178 2.8533 0.0001 7 6 3.6066 1.2028 -0.0005 8 6 4.3009 -0.0269 -0.0005 9 16 6.0628 -0.0353 -0.0005 10 6 3.6142 -1.2163 -0.0056 11 6 2.2039 -1.2137 -0.0005 12 6 1.4950 -2.4356 -0.0016 13 1 0.4953 -2.4797 -0.4080 14 6 2.0874 -3.5879 0.5234 15 7 3.1534 -3.4905 1.2774 16 14 1.3583 -5.2665 0.1492 17 1 0.1640 -5.1051 -0.7186 18 1 2.3690 -6.1007 -0.5492 19 1 0.9617 -5.9280 1.4181 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 0.6252 2.7933 -0.0006 24 1 2.3800 4.5831 -0.0009 25 1 6.3654 -0.0367 1.3100 26 1 4.1534 -2.1521 -0.0104 27 1 3.5647 -4.2901 1.6414 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307230714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = 25.432893 kcal Electronic energy + Delta-G solvation = -13559.451535 eV Core-core repulsion = 11305.965269 eV Total energy + Delta-G solvation = -2253.486265 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.36075 -35.04709 -32.96896 -31.72362 -28.76774 -26.33326 -25.11428 -22.49749 -20.51434 -19.85950 -17.69593 -16.76011 -15.96785 -15.50167 -14.81112 -14.08287 -13.83430 -13.19715 -13.06429 -12.68213 -12.14234 -11.86362 -11.56708 -11.51601 -11.26571 -11.06535 -10.92911 -10.74725 -10.25660 -9.91337 -9.80510 -9.43576 -9.28451 -8.26132 -7.47934 -7.46298 -7.05434 -6.79108 -4.54107 1.74322 2.07219 2.48157 2.59435 2.89290 2.99078 3.01657 3.03850 3.28627 3.62471 3.79121 4.33845 5.28501 5.43399 5.93744 6.13656 6.21572 6.41642 6.48188 6.56588 6.64970 6.84269 6.88079 7.02491 7.18237 7.33374 7.44021 7.67072 7.92117 8.25438 8.58944 8.64622 9.97272 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.008514 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.444275 B = 3287.805586 C = 4265.910054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.160 4.160 3 C -0.046 4.046 4 C -0.112 4.112 5 C -0.216 4.216 6 S 0.036 5.964 7 C -0.185 4.185 8 C -0.069 4.069 9 S -0.161 6.161 10 C -0.057 4.057 11 C 0.103 3.897 12 C -0.447 4.447 13 H 0.088 0.912 14 C 0.073 3.927 15 N -0.795 5.795 16 Si 0.914 3.086 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.273 1.273 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.041 0.959 23 H 0.129 0.871 24 H 0.150 0.850 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 4.233 -1.197 4.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.054 4.054 4 C -0.144 4.144 5 C -0.350 4.350 6 S 0.296 5.704 7 C -0.303 4.303 8 C -0.185 4.185 9 S -0.003 6.003 10 C -0.080 4.080 11 C 0.097 3.903 12 C -0.476 4.476 13 H 0.106 0.894 14 C -0.145 4.145 15 N -0.421 5.421 16 Si 0.738 3.262 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.199 1.199 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.147 0.853 24 H 0.168 0.832 25 H 0.029 0.971 26 H 0.159 0.841 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.513 4.769 -1.274 5.162 hybrid contribution -2.440 -1.308 1.063 2.966 sum -0.927 3.461 -0.211 3.589 Atomic orbital electron populations 1.20404 0.92773 1.00937 1.00029 1.19692 0.94397 0.90441 1.11965 1.18785 0.91063 0.92510 1.03061 1.20933 0.99428 0.91309 1.02776 1.24781 0.97030 1.02149 1.11035 1.83595 1.06762 0.98251 1.81805 1.22109 0.95592 0.94523 1.18075 1.20063 0.91759 0.93666 1.13061 1.85356 1.05130 1.98485 1.11361 1.21926 0.94745 0.95557 0.95746 1.17299 0.90948 0.92079 0.89949 1.19587 1.02017 0.91844 1.34166 0.89403 1.25978 0.94259 1.01836 0.92464 1.69796 1.17843 1.32038 1.22384 0.86155 0.80188 0.80603 0.79294 1.18171 1.19457 1.19877 0.93535 0.91653 0.94001 0.85320 0.83199 0.97115 0.84051 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.20 36.01 0.33 -1.32 15 2 C -0.16 -3.71 6.01 -103.06 -0.62 -4.33 15 3 C -0.05 -1.04 5.96 -105.41 -0.63 -1.67 15 4 C -0.11 -2.12 9.79 -38.53 -0.38 -2.49 15 5 C -0.22 -3.75 11.01 28.85 0.32 -3.43 15 6 S 0.04 0.69 22.87 -107.50 -2.46 -1.77 15 7 C -0.19 -4.24 6.38 -37.82 -0.24 -4.48 15 8 C -0.07 -1.63 6.13 -38.78 -0.24 -1.87 15 9 S -0.16 -3.33 25.44 -107.50 -2.73 -6.06 15 10 C -0.06 -1.41 8.35 -38.85 -0.32 -1.74 15 11 C 0.10 2.57 5.55 -107.05 -0.59 1.98 15 12 C -0.45 -10.82 8.08 -37.85 -0.31 -11.12 15 13 H 0.09 2.02 6.81 -52.48 -0.36 1.67 15 14 C 0.07 1.69 5.17 -17.35 -0.09 1.60 15 15 N -0.80 -19.26 10.89 55.54 0.60 -18.65 15 16 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 15 17 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.06 1.28 6.72 -51.93 -0.35 0.93 15 22 H 0.04 0.73 7.23 -51.93 -0.38 0.35 15 23 H 0.13 2.08 7.51 -52.48 -0.39 1.69 15 24 H 0.15 2.06 8.06 -52.48 -0.42 1.64 15 25 H 0.06 1.29 9.07 97.61 0.89 2.18 15 26 H 0.14 3.61 6.15 -52.49 -0.32 3.28 15 27 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -25.52 259.71 -9.36 -34.89 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -0.89 Total: 4.15 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.77 Total: -28.87 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.60 Total: -18.65 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -5.19 Total: -7.83 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.52 -9.36 -34.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307230714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.319 kcal (2) G-P(sol) polarization free energy of solvation -25.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds