Wall clock time and date at job start Mon Mar 30 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32572 * 124.66309 * 2 1 4 4 C 1.40179 * 115.79006 * 179.68522 * 3 2 1 5 5 C 1.39495 * 112.71525 * 0.49514 * 4 3 2 6 6 C 1.40002 * 120.22719 * 179.76510 * 5 4 3 7 7 C 1.37553 * 121.63455 * 359.69349 * 6 5 4 8 8 C 1.38763 * 120.97566 * 0.03963 * 7 6 5 9 9 S 1.76205 * 120.06024 * 179.97438 * 8 7 6 10 10 C 1.41202 * 119.87912 * 359.97438 * 8 7 6 11 11 C 1.40276 * 120.44285 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00386 * 38.75027 * 11 10 8 13 13 C 1.39943 * 119.99727 * 218.75628 * 11 10 8 14 14 N 1.30927 * 119.99752 * 24.42844 * 13 11 10 15 15 Si 1.86790 * 120.00069 * 204.42512 * 13 11 10 16 16 H 1.48503 * 109.47336 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47607 * 300.00270 * 15 13 11 18 18 H 1.48506 * 109.47019 * 60.00230 * 15 13 11 19 19 S 1.75497 * 124.67381 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.46934 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47398 * 300.01806 * 1 2 3 22 22 H 1.09003 * 109.47105 * 60.02347 * 1 2 3 23 23 H 1.07997 * 122.10864 * 359.95874 * 3 2 1 24 24 H 1.08001 * 119.18206 * 179.70884 * 6 5 4 25 25 H 1.08006 * 119.51024 * 180.02562 * 7 6 5 26 26 H 1.41006 * 100.00168 * 266.83054 * 9 8 7 27 27 H 0.96998 * 120.00004 * 5.55577 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2610 1.0904 0.0000 4 6 3.6460 0.8742 0.0069 5 6 3.9798 -0.4802 0.0016 6 6 5.3229 -0.8751 0.0023 7 6 6.3454 0.0450 0.0020 8 6 6.0805 1.4071 0.0018 9 16 7.4090 2.5646 0.0022 10 6 4.7444 1.8638 0.0013 11 6 4.4631 3.2381 0.0016 12 1 5.0696 3.9136 -0.5832 13 6 3.3964 3.7337 0.7600 14 7 2.9698 3.0676 1.8032 15 14 2.5816 5.3457 0.2839 16 1 1.4865 5.6482 1.2402 17 1 3.5864 6.4384 0.3211 18 1 2.0242 5.2323 -1.0880 19 16 2.5054 -1.4433 0.0006 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5141 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 1.8350 2.0828 -0.0007 24 1 5.5622 -1.9283 0.0029 25 1 7.3696 -0.2979 0.0022 26 1 7.5427 2.7835 1.3887 27 1 3.4427 2.2737 2.0984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307233894.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:13 Heat of formation + Delta-G solvation = 11.493184 kcal Electronic energy + Delta-G solvation = -13741.988780 eV Core-core repulsion = 11487.898044 eV Total energy + Delta-G solvation = -2254.090736 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06861 -36.36692 -35.97265 -31.98346 -31.53307 -28.14149 -26.41689 -24.06959 -22.73501 -21.02941 -20.01223 -18.14219 -17.64281 -16.68654 -16.30442 -15.76961 -15.55454 -15.14063 -14.72332 -14.36647 -13.92427 -13.78751 -13.35824 -13.17937 -12.88382 -12.60503 -12.34670 -12.03582 -11.85582 -11.80341 -11.40390 -11.09679 -10.84800 -10.15450 -9.47426 -9.09477 -8.75467 -8.49878 -6.60676 -0.04134 0.48137 0.77038 1.14037 1.21933 1.49388 1.59021 1.65429 1.77852 2.01016 2.25086 2.55092 3.24393 3.99390 4.27564 4.39541 4.45939 4.71834 4.75097 4.82438 4.99383 5.14984 5.23926 5.26984 5.52800 5.65174 5.71995 5.73024 5.93673 6.09274 6.52445 6.68890 7.83871 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.013117 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.137897 B = 2134.044135 C = 3695.322259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.219 4.219 3 C -0.092 4.092 4 C -0.175 4.175 5 C -0.098 4.098 6 C -0.233 4.233 7 C -0.007 4.007 8 C -0.272 4.272 9 S -0.144 6.144 10 C 0.135 3.865 11 C -0.503 4.503 12 H 0.097 0.903 13 C 0.010 3.990 14 N -0.779 5.779 15 Si 1.105 2.895 16 H -0.268 1.268 17 H -0.256 1.256 18 H -0.258 1.258 19 S 0.069 5.931 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.133 0.867 26 H 0.059 0.941 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -2.345 -2.066 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.334 4.334 3 C -0.121 4.121 4 C -0.185 4.185 5 C -0.214 4.214 6 C -0.259 4.259 7 C -0.030 4.030 8 C -0.388 4.388 9 S 0.013 5.987 10 C 0.127 3.873 11 C -0.529 4.529 12 H 0.114 0.886 13 C -0.210 4.210 14 N -0.399 5.399 15 Si 0.921 3.079 16 H -0.192 1.192 17 H -0.180 1.180 18 H -0.182 1.182 19 S 0.332 5.668 20 H 0.099 0.901 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.151 0.849 26 H 0.024 0.976 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.195 -2.287 -1.838 5.119 hybrid contribution 1.205 -0.274 0.744 1.442 sum -2.990 -2.561 -1.094 4.087 Atomic orbital electron populations 1.20289 0.85765 1.03360 1.03163 1.24186 1.00987 0.94524 1.13670 1.19840 0.92031 0.99237 1.01019 1.19478 0.93542 0.92355 1.13113 1.22849 0.98167 0.96068 1.04315 1.19854 0.89175 0.98890 1.18002 1.20992 0.98464 0.91250 0.92343 1.20944 0.94172 0.94862 1.28791 1.85656 1.41880 1.60004 1.11128 1.18999 0.89446 0.92693 0.86143 1.20806 1.13589 0.93361 1.25136 0.88562 1.28439 0.93690 1.06974 0.91897 1.70610 1.36599 1.14527 1.18142 0.83166 0.76797 0.70202 0.77753 1.19204 1.18005 1.18234 1.83166 0.94936 1.08950 1.79716 0.90149 0.90780 0.90002 0.85751 0.85816 0.84899 0.97618 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 10.34 71.24 0.74 -1.21 15 2 C -0.22 -8.55 6.43 24.53 0.16 -8.39 15 3 C -0.09 -4.25 8.13 21.59 0.18 -4.07 15 4 C -0.18 -8.70 5.04 -19.96 -0.10 -8.80 15 5 C -0.10 -4.48 6.49 23.00 0.15 -4.33 15 6 C -0.23 -10.01 10.00 22.54 0.23 -9.78 15 7 C -0.01 -0.30 9.70 22.23 0.22 -0.08 15 8 C -0.27 -13.07 6.17 23.12 0.14 -12.93 15 9 S -0.14 -6.14 24.51 -56.49 -1.38 -7.53 15 10 C 0.13 6.95 5.11 -19.51 -0.10 6.85 15 11 C -0.50 -25.32 8.03 23.18 0.19 -25.14 15 12 H 0.10 4.82 7.49 -2.91 -0.02 4.80 15 13 C 0.01 0.47 3.65 85.24 0.31 0.78 15 14 N -0.78 -39.16 11.67 21.83 0.25 -38.91 15 15 Si 1.10 39.99 30.00 68.60 2.06 42.05 15 16 H -0.27 -9.50 7.11 99.48 0.71 -8.79 15 17 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 18 H -0.26 -8.82 7.11 99.48 0.71 -8.12 15 19 S 0.07 2.62 23.27 -56.49 -1.31 1.31 15 20 H 0.08 1.96 8.14 -2.38 -0.02 1.94 15 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.12 5.90 6.10 -2.91 -0.02 5.88 15 24 H 0.12 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.13 4.92 8.06 -2.91 -0.02 4.90 15 26 H 0.06 2.51 9.55 73.80 0.70 3.21 15 27 H 0.28 15.17 7.09 -92.71 -0.66 14.51 15 Total: -1.00 -54.77 260.62 3.74 -51.04 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 2.02 Total: 19.13 kcal Atomic # 6 Polarization: -69.20 SS G_CDS: 2.10 Total: -67.10 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.25 Total: -38.91 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.06 Total: 42.05 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.70 Total: -6.22 kcal Total: -54.77 3.74 -51.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233894.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.530 kcal (2) G-P(sol) polarization free energy of solvation -54.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds