Wall clock time and date at job start Mon Mar 30 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35822 * 119.94374 * 2 1 4 4 C 1.40298 * 120.85589 * 180.02562 * 3 2 1 5 5 S 1.75991 * 130.16247 * 179.97438 * 4 3 2 6 6 C 1.75255 * 92.31888 * 180.02562 * 5 4 3 7 7 S 1.76195 * 124.29167 * 180.02562 * 6 5 4 8 8 C 1.32747 * 111.41562 * 359.97438 * 6 5 4 9 9 C 1.40281 * 120.14172 * 359.97438 * 4 3 2 10 10 C 1.40508 * 119.05155 * 359.74780 * 9 4 3 11 11 C 1.39970 * 119.98043 * 0.52507 * 10 9 4 12 12 C 1.41257 * 120.06843 * 179.74623 * 11 10 9 13 13 H 1.07998 * 119.99838 * 209.62030 * 12 11 10 14 14 C 1.39851 * 120.00043 * 29.62752 * 12 11 10 15 15 N 1.30907 * 119.99832 * 197.11303 * 14 12 11 16 16 Si 1.86801 * 120.00314 * 17.10407 * 14 12 11 17 17 H 1.48496 * 109.47096 * 270.00323 * 16 14 12 18 18 H 1.48501 * 109.46812 * 30.00233 * 16 14 12 19 19 H 1.48497 * 109.46832 * 150.00364 * 16 14 12 20 20 H 1.09005 * 109.46560 * 270.01757 * 1 2 3 21 21 H 1.08993 * 109.47349 * 30.01455 * 1 2 3 22 22 H 1.08998 * 109.46931 * 150.02354 * 1 2 3 23 23 H 1.07997 * 119.57284 * 359.97438 * 3 2 1 24 24 H 1.34499 * 103.00245 * 269.97764 * 7 6 5 25 25 H 1.08003 * 122.64001 * 179.97438 * 8 6 5 26 26 H 1.08000 * 120.01119 * 180.24369 * 10 9 4 27 27 H 0.97002 * 119.99528 * 355.41493 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1769 0.0000 4 6 3.5878 1.1993 -0.0005 5 16 4.7013 2.5621 -0.0013 6 6 6.1022 1.5091 -0.0023 7 16 7.7704 2.0762 -0.0029 8 6 5.7471 0.2300 -0.0016 9 6 4.3114 -0.0025 -0.0005 10 6 3.6111 -1.2206 0.0054 11 6 2.2114 -1.2228 0.0001 12 6 1.5056 -2.4463 0.0007 13 1 0.5332 -2.5090 -0.4651 14 6 2.0658 -3.5765 0.6045 15 7 1.5961 -4.7668 0.3282 16 14 3.4844 -3.3878 1.8050 17 1 4.7705 -3.4516 1.0655 18 1 3.3759 -2.0785 2.4974 19 1 3.4343 -4.4831 2.8065 20 1 -0.3632 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5140 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6371 2.1076 -0.0004 24 1 8.0565 2.1737 -1.3135 25 1 6.4676 -0.5746 -0.0025 26 1 4.1527 -2.1550 0.0095 27 1 0.8176 -4.8604 -0.2429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307279491.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:59 Heat of formation + Delta-G solvation = 10.569438 kcal Electronic energy + Delta-G solvation = -13437.287929 eV Core-core repulsion = 11183.157136 eV Total energy + Delta-G solvation = -2254.130793 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29341 -36.92912 -35.34571 -32.31681 -31.85988 -27.94525 -26.48574 -23.76442 -23.39156 -21.04718 -20.05063 -19.21229 -17.85410 -16.78129 -16.31132 -16.07853 -15.53909 -15.27097 -14.79001 -14.41579 -14.28357 -13.92470 -13.49656 -13.02732 -12.78080 -12.72365 -12.50333 -12.03825 -11.98790 -11.53643 -11.34375 -11.30052 -10.86586 -10.28277 -9.45928 -9.23062 -9.18685 -8.59559 -6.54757 -0.38938 0.29640 0.58686 0.80659 1.14918 1.22279 1.36170 1.51771 1.73620 1.85049 2.15132 2.52540 3.31257 3.99374 4.05512 4.35973 4.43496 4.58552 4.71693 4.76583 4.89566 5.02596 5.10820 5.35641 5.44480 5.48322 5.56000 5.79619 5.93438 6.35191 6.50550 6.75115 8.00358 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026362 B = 0.008055 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.898416 B = 3475.125377 C = 4360.401550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.138 4.138 3 C -0.067 4.067 4 C -0.224 4.224 5 S 0.092 5.908 6 C -0.200 4.200 7 S -0.043 6.043 8 C -0.064 4.064 9 C -0.060 4.060 10 C -0.237 4.237 11 C 0.077 3.923 12 C -0.531 4.531 13 H 0.067 0.933 14 C 0.015 3.985 15 N -0.843 5.843 16 Si 1.096 2.904 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.281 1.281 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.051 0.949 23 H 0.134 0.866 24 H 0.081 0.919 25 H 0.160 0.840 26 H 0.108 0.892 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 10.758 0.196 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C -0.089 4.089 4 C -0.340 4.340 5 S 0.353 5.647 6 C -0.427 4.427 7 S 0.111 5.889 8 C -0.100 4.100 9 C -0.069 4.069 10 C -0.259 4.259 11 C 0.073 3.927 12 C -0.561 4.561 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.467 5.467 16 Si 0.918 3.082 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.208 1.208 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.070 0.930 23 H 0.151 0.849 24 H 0.046 0.954 25 H 0.178 0.822 26 H 0.126 0.874 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.145 11.720 1.301 14.331 hybrid contribution -2.192 -1.511 -2.278 3.504 sum 5.953 10.209 -0.977 11.858 Atomic orbital electron populations 1.20556 0.90272 1.01889 1.01916 1.20054 0.96874 0.92236 1.04913 1.19983 0.90614 0.97820 1.00434 1.22603 0.97843 0.96063 1.17520 1.83428 0.93368 1.07283 1.80602 1.24775 1.01086 0.98874 1.17951 1.85519 1.04527 1.86781 1.12033 1.21785 0.94302 0.96597 0.97293 1.19178 0.92075 0.93474 1.02139 1.20980 0.93843 0.95310 1.15802 1.17661 0.91655 0.93366 0.89974 1.20588 1.05477 0.95351 1.34650 0.91515 1.28042 1.03013 0.90933 0.97922 1.70628 1.20491 1.24860 1.30686 0.83269 0.73428 0.76618 0.74841 1.18661 1.19120 1.20822 0.91489 0.90518 0.93002 0.84858 0.95444 0.82220 0.87438 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.60 71.24 0.68 -2.55 15 2 C -0.14 -5.90 5.89 -19.72 -0.12 -6.02 15 3 C -0.07 -2.60 9.61 22.21 0.21 -2.38 15 4 C -0.22 -8.94 6.50 23.27 0.15 -8.79 15 5 S 0.09 3.00 23.21 -56.49 -1.31 1.69 15 6 C -0.20 -6.41 6.63 66.64 0.44 -5.97 15 7 S -0.04 -1.07 26.13 -56.49 -1.48 -2.54 15 8 C -0.06 -2.28 10.29 22.95 0.24 -2.04 15 9 C -0.06 -2.56 6.02 -20.37 -0.12 -2.69 15 10 C -0.24 -11.15 7.31 23.24 0.17 -10.98 15 11 C 0.08 3.77 5.11 -21.41 -0.11 3.66 15 12 C -0.53 -27.71 8.77 23.40 0.21 -27.50 15 13 H 0.07 3.59 6.50 -2.91 -0.02 3.57 15 14 C 0.02 0.80 5.41 85.22 0.46 1.26 15 15 N -0.84 -45.18 13.66 21.81 0.30 -44.89 15 16 Si 1.10 48.54 24.90 68.60 1.71 50.25 15 17 H -0.26 -10.79 6.46 99.48 0.64 -10.14 15 18 H -0.27 -11.86 7.02 99.48 0.70 -11.16 15 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 20 H 0.07 2.28 8.14 -2.38 -0.02 2.26 15 21 H 0.08 2.25 8.08 -2.39 -0.02 2.23 15 22 H 0.05 2.01 6.28 -2.39 -0.01 1.99 15 23 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 24 H 0.08 1.78 9.07 73.35 0.67 2.44 15 25 H 0.16 4.97 8.06 -2.91 -0.02 4.95 15 26 H 0.11 5.05 4.43 -2.91 -0.01 5.04 15 27 H 0.28 14.77 8.73 -92.71 -0.81 13.96 15 Total: -1.00 -54.52 256.98 3.21 -51.32 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.77 Total: 8.16 kcal Atomic # 6 Polarization: -66.21 SS G_CDS: 2.21 Total: -64.00 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.30 Total: -44.89 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.71 Total: 50.25 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.79 Total: -0.85 kcal Total: -54.52 3.21 -51.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307279491.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.888 kcal (2) G-P(sol) polarization free energy of solvation -54.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds