Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37962 * 119.67312 * 2 1 4 4 C 1.38491 * 120.36677 * 180.02562 * 3 2 1 5 5 C 1.38051 * 120.38672 * 359.97438 * 4 3 2 6 6 S 1.76200 * 119.92742 * 180.02562 * 5 4 3 7 7 C 1.42684 * 120.14278 * 359.97438 * 5 4 3 8 8 C 1.39483 * 128.49691 * 180.02562 * 7 5 4 9 9 C 1.37078 * 115.05086 * 180.02562 * 8 7 5 10 10 C 1.39867 * 124.84619 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00339 * 0.02562 * 10 9 8 12 12 C 1.40053 * 119.99441 * 180.02562 * 10 9 8 13 13 N 1.30854 * 120.00292 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99911 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46944 * 89.99846 * 14 12 10 16 16 H 1.48497 * 109.47417 * 210.00143 * 14 12 10 17 17 H 1.48502 * 109.47030 * 329.99965 * 14 12 10 18 18 S 1.75465 * 110.29728 * 359.97438 * 9 8 7 19 19 C 1.39450 * 119.67261 * 179.72836 * 2 1 3 20 20 H 1.09002 * 109.47152 * 90.00094 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00194 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00175 * 1 2 3 23 23 H 1.08008 * 119.81355 * 359.97438 * 3 2 1 24 24 H 1.07996 * 119.80757 * 180.02562 * 4 3 2 25 25 H 1.34493 * 103.00586 * 89.99990 * 6 5 4 26 26 H 1.07998 * 122.47055 * 359.97438 * 8 7 5 27 27 H 0.97001 * 119.99560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1987 0.0000 4 6 3.5748 1.2155 -0.0005 5 6 4.2875 0.0331 -0.0005 6 16 6.0491 0.0686 -0.0005 7 6 3.6006 -1.2175 0.0006 8 6 4.1395 -2.5040 0.0012 9 6 3.2183 -3.5191 0.0017 10 6 3.5313 -4.8823 0.0019 11 1 4.5637 -5.1994 0.0020 12 6 2.5058 -5.8362 0.0018 13 7 1.2549 -5.4520 0.0011 14 14 2.9236 -7.6568 0.0028 15 1 3.0338 -8.1387 1.4031 16 1 1.8530 -8.4109 -0.6974 17 1 4.2165 -7.8683 -0.6966 18 16 1.5906 -2.8639 0.0020 19 6 2.1974 -1.2116 0.0057 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6416 2.1292 -0.0004 24 1 4.1003 2.1590 -0.0001 25 1 6.3518 0.0747 1.3099 26 1 5.2039 -2.6868 0.0005 27 1 0.5447 -6.1127 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307358088.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = 7.716903 kcal Electronic energy + Delta-G solvation = -13334.448659 eV Core-core repulsion = 11080.194170 eV Total energy + Delta-G solvation = -2254.254488 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.26747 -35.20085 -33.41741 -31.63635 -29.14336 -26.23031 -25.51348 -22.39545 -20.87353 -19.05604 -18.13401 -17.02146 -15.71290 -15.40085 -14.69468 -14.11333 -13.90695 -13.35093 -12.92207 -12.76173 -12.08993 -12.06151 -11.79666 -11.60189 -11.45880 -11.18801 -10.81808 -10.61657 -10.33673 -10.18206 -9.77381 -9.42139 -9.15157 -8.25890 -7.49150 -7.40567 -7.25577 -6.44202 -4.79815 1.67106 2.21457 2.63940 2.75991 2.78924 2.85771 3.19154 3.48481 3.50028 3.57998 3.78382 4.49860 4.97210 5.56657 5.74762 5.93022 6.03722 6.10008 6.31610 6.54386 6.61869 6.75575 6.89541 7.06523 7.29173 7.37684 7.45830 7.66816 7.80016 7.94631 8.20584 8.30677 9.51778 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.007946 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.307725 B = 3522.862825 C = 4563.407816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.003 3.997 3 C -0.214 4.214 4 C -0.045 4.045 5 C -0.160 4.160 6 S -0.150 6.150 7 C 0.061 3.939 8 C -0.359 4.359 9 C 0.057 3.943 10 C -0.370 4.370 11 H 0.102 0.898 12 C 0.051 3.949 13 N -0.770 5.770 14 Si 0.941 3.059 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.254 1.254 18 S 0.141 5.859 19 C -0.269 4.269 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 2.125 0.310 2.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.002 4.002 3 C -0.237 4.237 4 C -0.068 4.068 5 C -0.274 4.274 6 S 0.008 5.992 7 C 0.051 3.949 8 C -0.384 4.384 9 C -0.063 4.063 10 C -0.404 4.404 11 H 0.120 0.880 12 C -0.171 4.171 13 N -0.395 5.395 14 Si 0.763 3.237 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.178 1.178 18 S 0.400 5.600 19 C -0.385 4.385 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.014 0.986 26 H 0.135 0.865 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.273 1.398 0.082 2.670 hybrid contribution 0.727 -0.079 1.069 1.295 sum -1.546 1.319 1.151 2.336 Atomic orbital electron populations 1.20818 0.92490 1.01997 1.01852 1.19180 0.94371 0.91342 0.95290 1.20289 0.93439 0.96085 1.13842 1.20892 0.93853 0.95875 0.96182 1.20736 0.92160 0.94471 1.20022 1.85317 1.04969 1.98528 1.10425 1.18025 0.91356 0.92551 0.92975 1.19708 0.98784 0.89375 1.30536 1.21573 0.94529 0.96476 0.93684 1.19418 0.95620 0.88956 1.36369 0.87974 1.26383 0.94109 1.04299 0.92319 1.68670 1.00802 1.38375 1.31684 0.85714 0.80025 0.78083 0.79879 1.18692 1.19443 1.17792 1.84758 1.07084 0.89282 1.78841 1.23562 0.97047 1.00859 1.17009 0.91443 0.92125 0.91702 0.87306 0.87008 0.98558 0.86467 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.85 36.01 0.35 -1.58 15 2 C 0.00 0.06 5.91 -104.27 -0.62 -0.56 15 3 C -0.21 -4.14 9.66 -39.59 -0.38 -4.52 15 4 C -0.04 -0.90 9.73 -39.56 -0.38 -1.29 15 5 C -0.16 -3.60 6.20 -37.94 -0.24 -3.83 15 6 S -0.15 -3.00 25.15 -107.50 -2.70 -5.70 15 7 C 0.06 1.53 5.85 -106.93 -0.63 0.90 15 8 C -0.36 -9.20 9.69 -39.54 -0.38 -9.59 15 9 C 0.06 1.47 6.12 -39.39 -0.24 1.22 15 10 C -0.37 -8.94 9.26 -38.29 -0.35 -9.29 15 11 H 0.10 2.33 7.85 -52.49 -0.41 1.92 15 12 C 0.05 1.13 5.50 -17.29 -0.10 1.03 15 13 N -0.77 -17.33 10.58 55.56 0.59 -16.74 15 14 Si 0.94 16.36 29.56 -169.99 -5.03 11.33 15 15 H -0.26 -4.52 7.11 56.52 0.40 -4.11 15 16 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 17 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 18 S 0.14 3.37 19.37 -107.50 -2.08 1.29 15 19 C -0.27 -6.40 6.29 -38.35 -0.24 -6.64 15 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 22 H 0.06 1.11 7.55 -51.93 -0.39 0.72 15 23 H 0.11 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.11 1.93 8.06 -52.49 -0.42 1.50 15 25 H 0.05 0.96 9.07 97.61 0.89 1.84 15 26 H 0.12 2.95 7.77 -52.49 -0.41 2.54 15 27 H 0.30 6.06 8.30 -40.82 -0.34 5.72 15 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -25.99 262.90 -9.61 -35.60 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -1.15 Total: 4.39 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -3.20 Total: -34.14 kcal Atomic # 7 Polarization: -17.33 SS G_CDS: 0.59 Total: -16.74 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -4.79 Total: -4.41 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.99 -9.61 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307358088.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.320 kcal (2) G-P(sol) polarization free energy of solvation -25.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds