Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41928 * 119.84597 * 2 1 4 4 C 1.39790 * 128.41811 * 0.02562 * 3 2 1 5 5 C 1.36942 * 115.03219 * 179.97438 * 4 3 2 6 6 C 1.39915 * 124.83222 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99603 * 0.02562 * 6 5 4 8 8 C 1.40185 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.30754 * 120.00193 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99790 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47496 * 59.99853 * 10 8 6 12 12 H 1.48498 * 109.47021 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47219 * 299.99787 * 10 8 6 14 14 S 1.75455 * 110.34201 * 0.02562 * 5 4 3 15 15 C 1.40338 * 118.68077 * 180.02562 * 3 2 1 16 16 C 1.39683 * 119.95991 * 359.97438 * 15 3 2 17 17 C 1.37515 * 120.54958 * 359.97438 * 16 15 3 18 18 C 1.37537 * 119.85284 * 180.25894 * 2 1 3 19 19 S 1.76196 * 119.83327 * 0.02562 * 18 2 1 20 20 H 1.08996 * 109.46825 * 90.00247 * 1 2 3 21 21 H 1.09000 * 109.46531 * 209.99769 * 1 2 3 22 22 H 1.08992 * 109.47345 * 329.99932 * 1 2 3 23 23 H 1.08008 * 122.48719 * 0.02562 * 4 3 2 24 24 H 0.96999 * 120.00024 * 180.02562 * 9 8 6 25 25 H 1.08001 * 119.72081 * 180.02562 * 16 15 3 26 26 H 1.08002 * 119.90930 * 180.02562 * 17 16 15 27 27 H 1.34502 * 103.00150 * 270.26366 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2310 0.0000 4 6 1.6957 2.5295 0.0005 5 6 2.6337 3.5273 0.0009 6 6 2.3443 4.8962 0.0019 7 1 1.3176 5.2310 0.0029 8 6 3.3871 5.8330 0.0017 9 7 4.6302 5.4276 0.0001 10 14 3.0008 7.6606 0.0038 11 1 2.2147 7.9990 1.2174 12 1 4.2681 8.4345 0.0026 13 1 2.2123 8.0012 -1.2075 14 16 4.2501 2.8448 -0.0001 15 6 3.6165 1.2025 -0.0006 16 6 4.2893 -0.0216 -0.0005 17 6 3.5881 -1.2046 0.0005 18 6 2.1917 -1.1929 -0.0054 19 16 1.3023 -2.7139 -0.0129 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 0.6346 2.7310 0.0014 24 1 5.3518 6.0759 0.0003 25 1 5.3691 -0.0391 -0.0005 26 1 4.1189 -2.1452 0.0009 27 1 1.1439 -2.9783 1.2963 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307362037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = 9.287761 kcal Electronic energy + Delta-G solvation = -13274.200880 eV Core-core repulsion = 11020.014509 eV Total energy + Delta-G solvation = -2254.186371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.40250 -35.06026 -33.18889 -31.93455 -29.15903 -26.55034 -25.02264 -22.59659 -20.79501 -19.43736 -17.83264 -17.09341 -15.89182 -15.49061 -14.82471 -14.33255 -13.87078 -13.25924 -12.94208 -12.52265 -12.16440 -12.01040 -11.76123 -11.58816 -11.54025 -11.34913 -10.85532 -10.63762 -10.31372 -10.15891 -9.87622 -9.37006 -9.13974 -8.36062 -7.64601 -7.48825 -7.25706 -6.49588 -4.76100 1.73342 1.97028 2.36400 2.77341 2.80014 2.84265 3.14901 3.28675 3.51267 3.51684 3.75337 4.49580 4.93729 5.63831 5.78197 6.02209 6.19604 6.27612 6.35309 6.55021 6.58951 6.70111 6.99544 7.11795 7.20932 7.25936 7.39819 7.62091 7.79151 7.93724 8.20960 8.32588 9.57584 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.006013 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.286660 B = 4655.593566 C = 5208.128050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.066 4.066 3 C 0.015 3.985 4 C -0.358 4.358 5 C 0.053 3.947 6 C -0.383 4.383 7 H 0.100 0.900 8 C 0.053 3.947 9 N -0.777 5.777 10 Si 0.940 3.060 11 H -0.259 1.259 12 H -0.272 1.272 13 H -0.258 1.258 14 S 0.148 5.852 15 C -0.247 4.247 16 C -0.062 4.062 17 C -0.154 4.154 18 C -0.096 4.096 19 S -0.153 6.153 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.109 0.891 24 H 0.303 0.697 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -2.567 0.395 2.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.070 4.070 3 C 0.005 3.995 4 C -0.383 4.383 5 C -0.066 4.066 6 C -0.417 4.417 7 H 0.117 0.883 8 C -0.168 4.168 9 N -0.403 5.403 10 Si 0.762 3.238 11 H -0.183 1.183 12 H -0.197 1.197 13 H -0.183 1.183 14 S 0.409 5.591 15 C -0.363 4.363 16 C -0.086 4.086 17 C -0.177 4.177 18 C -0.210 4.210 19 S 0.004 5.996 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 0.059 -2.643 0.166 2.648 hybrid contribution -1.010 0.870 1.051 1.697 sum -0.951 -1.773 1.217 2.351 Atomic orbital electron populations 1.20750 0.91828 1.01728 1.01920 1.19932 0.95028 0.90952 1.01125 1.17827 0.91540 0.92612 0.97569 1.19565 0.98123 0.89519 1.31074 1.21430 0.94202 0.96461 0.94521 1.19311 0.95352 0.88953 1.38035 0.88254 1.26330 0.94109 1.04093 0.92317 1.68589 1.00547 1.38555 1.32596 0.85783 0.79208 0.78242 0.80526 1.18306 1.19672 1.18266 1.84870 1.07330 0.89220 1.77710 1.23867 0.97662 1.01360 1.13364 1.20142 0.97889 0.90376 1.00232 1.20717 0.92163 0.97037 1.07783 1.20345 0.95167 0.92566 1.12969 1.85492 1.75082 1.27988 1.11006 0.91610 0.91863 0.92121 0.87273 0.88385 0.87472 0.86805 0.97382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.34 36.01 0.34 -1.58 15 2 C -0.07 -1.41 5.97 -103.46 -0.62 -2.03 15 3 C 0.01 0.35 5.82 -107.11 -0.62 -0.27 15 4 C -0.36 -8.85 9.56 -39.47 -0.38 -9.23 15 5 C 0.05 1.35 6.11 -39.42 -0.24 1.11 15 6 C -0.38 -9.20 9.27 -38.22 -0.35 -9.55 15 7 H 0.10 2.24 7.85 -52.49 -0.41 1.83 15 8 C 0.05 1.17 5.50 -17.28 -0.10 1.08 15 9 N -0.78 -17.65 10.58 55.56 0.59 -17.06 15 10 Si 0.94 16.45 29.56 -169.99 -5.03 11.43 15 11 H -0.26 -4.50 7.11 56.52 0.40 -4.09 15 12 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 13 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 14 S 0.15 3.54 20.13 -107.50 -2.16 1.38 15 15 C -0.25 -5.85 6.47 -38.25 -0.25 -6.10 15 16 C -0.06 -1.31 10.05 -39.31 -0.39 -1.70 15 17 C -0.15 -3.04 9.78 -39.32 -0.38 -3.43 15 18 C -0.10 -1.94 6.08 -39.31 -0.24 -2.18 15 19 S -0.15 -2.58 23.88 -107.50 -2.57 -5.14 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.06 1.04 6.72 -51.93 -0.35 0.69 15 22 H 0.06 1.09 7.13 -51.93 -0.37 0.72 15 23 H 0.11 2.57 7.35 -52.48 -0.39 2.18 15 24 H 0.30 6.16 8.29 -40.82 -0.34 5.82 15 25 H 0.11 1.99 8.06 -52.49 -0.42 1.56 15 26 H 0.11 1.96 8.06 -52.49 -0.42 1.53 15 27 H 0.06 0.97 9.07 97.61 0.89 1.86 15 LS Contribution 260.08 15.07 3.92 3.92 Total: -1.00 -25.32 260.08 -9.52 -34.84 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -1.03 Total: 4.51 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: -3.24 Total: -33.87 kcal Atomic # 7 Polarization: -17.65 SS G_CDS: 0.59 Total: -17.06 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.43 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -4.73 Total: -3.76 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.32 -9.52 -34.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307362037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.129 kcal (2) G-P(sol) polarization free energy of solvation -25.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds