Wall clock time and date at job start Mon Mar 30 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37759 * 119.72436 * 2 1 4 4 C 1.38405 * 120.28533 * 179.74705 * 3 2 1 5 5 C 1.38374 * 120.16030 * 0.49777 * 4 3 2 6 6 S 1.76191 * 119.92712 * 179.74967 * 5 4 3 7 7 C 1.41229 * 120.13942 * 359.78073 * 5 4 3 8 8 C 1.46513 * 129.52431 * 179.97438 * 7 5 4 9 9 C 1.40841 * 123.29873 * 359.97438 * 8 7 5 10 10 H 1.07996 * 119.99922 * 327.96728 * 9 8 7 11 11 C 1.39634 * 119.99882 * 147.97152 * 9 8 7 12 12 N 1.31115 * 119.99891 * 167.97678 * 11 9 8 13 13 Si 1.86797 * 120.00041 * 347.97883 * 11 9 8 14 14 H 1.48499 * 109.47137 * 89.73574 * 13 11 9 15 15 H 1.48497 * 109.47036 * 209.73635 * 13 11 9 16 16 H 1.48500 * 109.47013 * 329.73432 * 13 11 9 17 17 C 1.36511 * 113.40298 * 179.97438 * 8 7 5 18 18 S 1.69992 * 111.92318 * 359.97438 * 17 8 7 19 19 C 1.39272 * 119.19776 * 359.96990 * 7 5 4 20 20 H 1.09000 * 109.47377 * 269.72626 * 1 2 3 21 21 H 1.09006 * 109.47185 * 149.72411 * 1 2 3 22 22 H 1.09004 * 109.47293 * 29.73011 * 1 2 3 23 23 H 1.08007 * 119.85623 * 359.97438 * 3 2 1 24 24 H 1.07998 * 119.91560 * 180.25958 * 4 3 2 25 25 H 1.34498 * 103.00457 * 270.02599 * 6 5 4 26 26 H 0.96999 * 120.00050 * 180.02562 * 12 11 9 27 27 H 1.08001 * 124.04197 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1963 0.0000 4 6 3.5740 1.2099 0.0053 5 6 4.2809 0.0204 0.0002 6 16 6.0426 0.0448 0.0003 7 6 3.5932 -1.2132 -0.0057 8 6 4.1264 -2.5779 -0.0122 9 6 5.5042 -2.8698 -0.0140 10 1 6.1966 -2.2037 -0.5073 11 6 5.9749 -4.0203 0.6219 12 7 7.2083 -4.4197 0.4257 13 14 4.8476 -4.9905 1.7520 14 1 4.1205 -6.0174 0.9633 15 1 5.6558 -5.6558 2.8052 16 1 3.8702 -4.0695 2.3858 17 6 3.1567 -3.5388 -0.0163 18 16 1.5959 -2.8654 -0.0119 19 6 2.2005 -1.2146 -0.0057 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3634 -0.8875 -0.5181 22 1 -0.3634 0.8924 -0.5096 23 1 1.6431 2.1277 -0.0004 24 1 4.1034 2.1512 0.0095 25 1 6.3453 0.0552 -1.3102 26 1 7.5352 -5.2192 0.8671 27 1 3.3572 -4.6000 -0.0216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307375313.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:44 Heat of formation + Delta-G solvation = 32.901721 kcal Electronic energy + Delta-G solvation = -13654.766007 eV Core-core repulsion = 11401.603614 eV Total energy + Delta-G solvation = -2253.162393 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.91062 -35.28486 -32.75220 -32.06021 -28.97517 -26.99036 -25.45450 -22.73157 -21.37075 -19.48238 -17.94165 -16.71168 -16.05703 -15.42953 -14.82246 -14.38916 -14.24325 -13.77035 -13.09213 -12.88111 -12.36330 -12.18903 -11.95403 -11.69732 -11.42480 -11.16139 -10.79390 -10.71827 -10.20979 -9.94871 -9.79059 -9.54078 -9.15053 -8.49768 -7.67722 -7.21353 -6.87836 -6.59299 -4.33920 1.28715 1.67929 2.36256 2.62280 3.04868 3.23336 3.30204 3.40745 3.50851 3.59425 4.10134 4.24198 5.13182 5.14934 5.32590 5.46673 5.61922 5.78282 5.87485 6.06841 6.22426 6.35031 6.60136 6.67770 6.82701 7.00979 7.23510 7.45704 7.66559 8.41849 8.50568 8.86330 10.18312 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.011554 C = 0.007930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.479759 B = 2422.906402 C = 3530.059707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.070 4.070 6 S -0.111 6.111 7 C -0.018 4.018 8 C 0.076 3.924 9 C -0.401 4.401 10 H 0.113 0.887 11 C 0.086 3.914 12 N -0.813 5.813 13 Si 0.911 3.089 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.245 1.245 17 C -0.446 4.446 18 S 0.058 5.942 19 C -0.138 4.138 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.128 0.872 25 H 0.065 0.935 26 H 0.284 0.716 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 7.609 0.063 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.050 4.050 3 C -0.153 4.153 4 C -0.113 4.113 5 C -0.184 4.184 6 S 0.047 5.953 7 C -0.031 4.031 8 C 0.067 3.933 9 C -0.433 4.433 10 H 0.130 0.870 11 C -0.132 4.132 12 N -0.438 5.438 13 Si 0.739 3.261 14 H -0.201 1.201 15 H -0.223 1.223 16 H -0.168 1.168 17 C -0.581 4.581 18 S 0.321 5.679 19 C -0.255 4.255 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.146 0.854 25 H 0.029 0.971 26 H 0.094 0.906 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.302 6.706 0.311 10.676 hybrid contribution 0.331 -0.175 -0.495 0.621 sum -7.971 6.530 -0.184 10.306 Atomic orbital electron populations 1.20800 0.91374 1.02541 1.02304 1.19379 0.95346 0.90945 0.99304 1.20671 0.93715 0.96577 1.04342 1.21252 0.93901 0.96605 0.99534 1.20990 0.94969 0.93717 1.08716 1.85773 1.01074 1.97830 1.10600 1.19799 0.91489 0.94201 0.97576 1.17531 0.94652 0.86867 0.94272 1.19452 0.90973 1.05207 1.27699 0.86953 1.26049 0.95352 0.95683 0.96150 1.69752 1.16355 1.21550 1.36142 0.86241 0.80113 0.79873 0.79853 1.20142 1.22296 1.16780 1.23796 0.94438 1.01832 1.37987 1.81668 1.10286 0.94036 1.81931 1.22632 0.96510 0.97819 1.08583 0.91057 0.91511 0.91548 0.85817 0.85385 0.97066 0.90616 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.86 36.00 0.35 -1.13 15 2 C -0.04 -0.75 5.91 -104.19 -0.62 -1.36 15 3 C -0.13 -2.02 9.65 -39.69 -0.38 -2.41 15 4 C -0.09 -1.49 9.75 -39.47 -0.39 -1.88 15 5 C -0.07 -1.45 6.16 -38.40 -0.24 -1.69 15 6 S -0.11 -2.26 22.25 -107.50 -2.39 -4.65 15 7 C -0.02 -0.42 6.02 -105.04 -0.63 -1.06 15 8 C 0.08 1.96 5.17 -106.20 -0.55 1.41 15 9 C -0.40 -10.83 8.57 -38.08 -0.33 -11.16 15 10 H 0.11 3.09 5.65 -47.14 -0.27 2.82 15 11 C 0.09 2.29 5.49 -17.34 -0.10 2.19 15 12 N -0.81 -21.95 13.94 55.53 0.77 -21.17 15 13 Si 0.91 21.77 24.62 -169.99 -4.19 17.58 15 14 H -0.27 -6.45 6.62 56.52 0.37 -6.07 15 15 H -0.30 -6.80 7.11 56.52 0.40 -6.40 15 16 H -0.24 -6.02 6.83 56.52 0.39 -5.64 15 17 C -0.45 -11.01 7.99 30.11 0.24 -10.77 15 18 S 0.06 1.22 22.22 -107.50 -2.39 -1.17 15 19 C -0.14 -2.90 6.27 -38.59 -0.24 -3.14 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 0.89 7.56 -51.93 -0.39 0.50 15 22 H 0.07 0.70 8.08 -51.93 -0.42 0.29 15 23 H 0.12 1.46 8.06 -52.48 -0.42 1.03 15 24 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.07 1.26 9.07 97.61 0.89 2.15 15 26 H 0.28 7.01 8.30 -40.82 -0.34 6.67 15 27 H 0.14 3.52 4.90 -52.49 -0.26 3.26 15 LS Contribution 252.26 15.07 3.80 3.80 Total: -1.00 -28.03 252.26 -8.16 -36.19 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -0.90 Total: 0.41 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -2.87 Total: -30.99 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.77 Total: -21.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.19 Total: 17.58 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -4.78 Total: -5.82 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.03 -8.16 -36.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307375313.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.087 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds