Wall clock time and date at job start Mon Mar 30 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37759 * 119.72436 * 2 1 4 4 C 1.38405 * 120.28533 * 179.74705 * 3 2 1 5 5 C 1.38374 * 120.16030 * 0.49777 * 4 3 2 6 6 S 1.76191 * 119.92712 * 179.74967 * 5 4 3 7 7 C 1.41229 * 120.13942 * 359.78073 * 5 4 3 8 8 C 1.46513 * 129.52431 * 179.97438 * 7 5 4 9 9 C 1.40841 * 123.29873 * 359.97438 * 8 7 5 10 10 H 1.07996 * 119.99922 * 327.96728 * 9 8 7 11 11 C 1.39634 * 119.99882 * 147.97152 * 9 8 7 12 12 N 1.31115 * 119.99891 * 167.97678 * 11 9 8 13 13 Si 1.86797 * 120.00041 * 347.97883 * 11 9 8 14 14 H 1.48499 * 109.47137 * 89.73574 * 13 11 9 15 15 H 1.48497 * 109.47036 * 209.73635 * 13 11 9 16 16 H 1.48500 * 109.47013 * 329.73432 * 13 11 9 17 17 C 1.36511 * 113.40298 * 179.97438 * 8 7 5 18 18 S 1.69992 * 111.92318 * 359.97438 * 17 8 7 19 19 C 1.39272 * 119.19776 * 359.96990 * 7 5 4 20 20 H 1.09000 * 109.47377 * 269.72626 * 1 2 3 21 21 H 1.09006 * 109.47185 * 149.72411 * 1 2 3 22 22 H 1.09004 * 109.47293 * 29.73011 * 1 2 3 23 23 H 1.08007 * 119.85623 * 359.97438 * 3 2 1 24 24 H 1.07998 * 119.91560 * 180.25958 * 4 3 2 25 25 H 1.34498 * 103.00457 * 270.02599 * 6 5 4 26 26 H 0.96999 * 120.00050 * 180.02562 * 12 11 9 27 27 H 1.08001 * 124.04197 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1963 0.0000 4 6 3.5740 1.2099 0.0053 5 6 4.2809 0.0204 0.0002 6 16 6.0426 0.0448 0.0003 7 6 3.5932 -1.2132 -0.0057 8 6 4.1264 -2.5779 -0.0122 9 6 5.5042 -2.8698 -0.0140 10 1 6.1966 -2.2037 -0.5073 11 6 5.9749 -4.0203 0.6219 12 7 7.2083 -4.4197 0.4257 13 14 4.8476 -4.9905 1.7520 14 1 4.1205 -6.0174 0.9633 15 1 5.6558 -5.6558 2.8052 16 1 3.8702 -4.0695 2.3858 17 6 3.1567 -3.5388 -0.0163 18 16 1.5959 -2.8654 -0.0119 19 6 2.2005 -1.2146 -0.0057 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3634 -0.8875 -0.5181 22 1 -0.3634 0.8924 -0.5096 23 1 1.6431 2.1277 -0.0004 24 1 4.1034 2.1512 0.0095 25 1 6.3453 0.0552 -1.3102 26 1 7.5352 -5.2192 0.8671 27 1 3.3572 -4.6000 -0.0216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307375313.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:43 Heat of formation + Delta-G solvation = 16.810342 kcal Electronic energy + Delta-G solvation = -13655.463782 eV Core-core repulsion = 11401.603614 eV Total energy + Delta-G solvation = -2253.860167 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40582 -37.01260 -34.59571 -33.41536 -30.63460 -28.44736 -27.12498 -24.32187 -22.84231 -21.23337 -19.50782 -18.59984 -17.66957 -17.12783 -16.36734 -15.97095 -15.80563 -15.12286 -14.82926 -14.41026 -14.01857 -13.71281 -13.28828 -13.14207 -13.04215 -12.83249 -12.49661 -12.34373 -11.86421 -11.73631 -11.48052 -11.24388 -11.02898 -10.05694 -9.30197 -8.98329 -8.64435 -8.32737 -6.31809 -0.23489 0.18858 0.82536 1.02708 1.15458 1.27764 1.42729 1.63722 1.73067 1.91028 2.15738 2.67778 3.19268 3.92202 3.96899 4.12573 4.39128 4.60037 4.70806 4.81069 4.85752 5.04433 5.05753 5.21761 5.34079 5.45752 5.58845 5.74827 5.94776 6.41682 6.54725 6.87078 8.25314 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.011554 C = 0.007930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.479759 B = 2422.906402 C = 3530.059707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.040 4.040 3 C -0.113 4.113 4 C -0.072 4.072 5 C -0.095 4.095 6 S -0.127 6.127 7 C -0.063 4.063 8 C 0.060 3.940 9 C -0.431 4.431 10 H 0.096 0.904 11 C 0.052 3.948 12 N -0.851 5.851 13 Si 0.956 3.044 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.258 1.258 17 C -0.458 4.458 18 S 0.094 5.906 19 C -0.158 4.158 20 H 0.087 0.913 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.178 0.822 24 H 0.162 0.838 25 H 0.065 0.935 26 H 0.290 0.710 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 10.061 0.375 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.209 4.209 6 S 0.031 5.969 7 C -0.075 4.075 8 C 0.050 3.950 9 C -0.464 4.464 10 H 0.113 0.887 11 C -0.161 4.161 12 N -0.479 5.479 13 Si 0.782 3.218 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.183 1.183 17 C -0.593 4.593 18 S 0.357 5.643 19 C -0.275 4.275 20 H 0.106 0.894 21 H 0.080 0.920 22 H 0.120 0.880 23 H 0.195 0.805 24 H 0.180 0.820 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.305 9.164 0.620 14.567 hybrid contribution 1.078 -0.729 -0.656 1.458 sum -10.227 8.435 -0.036 13.257 Atomic orbital electron populations 1.20922 0.88140 1.04134 1.03766 1.19972 0.97694 0.89863 0.97003 1.21301 0.93103 0.98042 1.01036 1.21741 0.94903 0.96380 0.96583 1.21245 0.94592 0.94436 1.10637 1.85735 1.02514 1.97760 1.10865 1.19850 0.92935 0.93880 1.00785 1.17815 0.94302 0.88936 0.93920 1.19495 0.91766 1.05705 1.29447 0.88663 1.26561 0.96238 0.96328 0.97022 1.69778 1.17407 1.22743 1.37932 0.85566 0.78665 0.78736 0.78786 1.19770 1.20885 1.18252 1.24051 0.97193 1.01559 1.36475 1.81283 1.06981 0.94136 1.81945 1.22945 0.95930 0.98992 1.09588 0.89433 0.92022 0.87978 0.80459 0.82029 0.97027 0.90016 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.86 71.23 0.70 -1.64 15 2 C -0.04 -1.17 5.91 -19.58 -0.12 -1.29 15 3 C -0.11 -2.83 9.65 22.20 0.21 -2.62 15 4 C -0.07 -2.17 9.75 22.34 0.22 -1.95 15 5 C -0.10 -3.85 6.16 23.04 0.14 -3.71 15 6 S -0.13 -5.26 22.25 -56.49 -1.26 -6.52 15 7 C -0.06 -2.90 6.02 -20.14 -0.12 -3.02 15 8 C 0.06 3.18 5.17 -20.89 -0.11 3.07 15 9 C -0.43 -24.35 8.57 23.24 0.20 -24.15 15 10 H 0.10 5.56 5.65 -6.32 -0.04 5.52 15 11 C 0.05 2.91 5.49 85.14 0.47 3.38 15 12 N -0.85 -47.93 13.94 21.78 0.30 -47.63 15 13 Si 0.96 46.07 24.62 68.60 1.69 47.76 15 14 H -0.27 -12.72 6.62 99.48 0.66 -12.07 15 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 16 H -0.26 -12.86 6.83 99.48 0.68 -12.18 15 17 C -0.46 -22.93 7.99 67.42 0.54 -22.39 15 18 S 0.09 3.84 22.22 -56.49 -1.26 2.58 15 19 C -0.16 -6.30 6.27 22.91 0.14 -6.15 15 20 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.06 1.37 7.56 -2.38 -0.02 1.35 15 22 H 0.10 1.45 8.08 -2.39 -0.02 1.43 15 23 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 24 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 25 H 0.07 2.63 9.07 73.35 0.67 3.29 15 26 H 0.29 14.88 8.30 -92.71 -0.77 14.11 15 27 H 0.13 6.57 4.90 -2.91 -0.01 6.56 15 Total: -1.00 -63.92 252.26 3.55 -60.38 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.79 Total: 3.90 kcal Atomic # 6 Polarization: -62.76 SS G_CDS: 2.28 Total: -60.47 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.30 Total: -47.63 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.69 Total: 47.76 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.51 Total: -3.94 kcal Total: -63.92 3.55 -60.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307375313.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.187 kcal (2) G-P(sol) polarization free energy of solvation -63.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds