Wall clock time and date at job start Mon Mar 30 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37548 * 119.17680 * 2 1 4 4 C 1.38777 * 120.97277 * 180.02562 * 3 2 1 5 5 S 1.76200 * 120.06122 * 180.02562 * 4 3 2 6 6 C 1.41200 * 119.87767 * 0.02562 * 4 3 2 7 7 C 1.40272 * 120.44378 * 180.02562 * 6 4 3 8 8 H 1.08006 * 119.99911 * 320.49261 * 7 6 4 9 9 C 1.39943 * 120.00002 * 140.49007 * 7 6 4 10 10 N 1.30922 * 119.99897 * 339.67352 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 159.67968 * 9 7 6 12 12 H 1.48500 * 109.47276 * 60.00039 * 11 9 7 13 13 H 1.48506 * 109.47301 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46962 * 299.99983 * 11 9 7 15 15 C 1.47852 * 119.11478 * 359.97438 * 6 4 3 16 16 C 1.40165 * 129.11897 * 180.02562 * 15 6 4 17 17 C 1.32569 * 115.79876 * 180.24978 * 16 15 6 18 18 S 1.75506 * 110.65757 * 359.62803 * 17 16 15 19 19 C 1.39505 * 118.16840 * 0.02562 * 15 6 4 20 20 H 1.08995 * 109.47386 * 269.97558 * 1 2 3 21 21 H 1.09000 * 109.47418 * 29.98351 * 1 2 3 22 22 H 1.09008 * 109.46756 * 149.98222 * 1 2 3 23 23 H 1.07996 * 119.51807 * 359.97331 * 3 2 1 24 24 H 1.41001 * 100.00070 * 89.99617 * 5 4 3 25 25 H 0.97005 * 120.00434 * 180.29465 * 10 9 7 26 26 H 1.08006 * 122.10176 * 359.97438 * 16 15 6 27 27 H 1.08000 * 124.67220 * 179.73007 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1775 1.2010 0.0000 4 6 3.5646 1.2445 -0.0005 5 16 4.3990 2.7964 0.0002 6 6 4.3060 0.0428 -0.0016 7 6 5.7084 0.0729 -0.0016 8 1 6.2328 0.8065 -0.5961 9 6 6.4281 -0.8476 0.7686 10 7 5.8476 -1.4581 1.7708 11 14 8.2169 -1.2052 0.3668 12 1 9.0079 0.0471 0.4726 13 1 8.7485 -2.2082 1.3244 14 1 8.3167 -1.7384 -1.0155 15 6 3.5845 -1.2477 -0.0016 16 6 4.1020 -2.5503 -0.0021 17 6 3.2059 -3.5272 -0.0072 18 16 1.5772 -2.8734 -0.0013 19 6 2.1897 -1.2223 -0.0011 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3634 0.8901 -0.5136 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6164 2.1237 -0.0004 24 1 4.5155 3.0111 1.3888 25 1 6.3475 -2.0929 2.3074 26 1 5.1642 -2.7459 -0.0030 27 1 3.4451 -4.5804 -0.0124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307382077.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:46 Heat of formation + Delta-G solvation = 30.573046 kcal Electronic energy + Delta-G solvation = -13757.909664 eV Core-core repulsion = 11504.646293 eV Total energy + Delta-G solvation = -2253.263371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.22251 -34.59430 -33.93736 -31.28376 -28.28160 -27.44443 -24.06296 -22.68632 -20.84322 -19.26054 -17.97411 -16.14712 -15.84976 -15.33091 -14.73882 -14.06996 -13.77141 -13.20301 -12.95758 -12.65497 -12.09207 -11.91887 -11.65034 -11.44204 -11.29607 -11.10096 -10.97730 -10.71169 -10.30313 -10.13073 -9.61666 -9.39382 -9.14272 -8.17440 -7.33256 -7.22440 -6.97208 -6.62073 -4.68262 1.82067 2.32803 2.58291 2.92851 2.93347 2.97441 2.99403 3.06937 3.52336 3.72270 3.86752 4.30749 5.16323 5.79133 5.91960 5.97122 6.19331 6.27536 6.43534 6.54104 6.66253 6.80461 6.89153 7.06363 7.19530 7.51668 7.57818 7.64481 7.84286 8.16506 8.44514 8.52418 9.81105 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.011974 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.736065 B = 2337.823689 C = 3691.167965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.199 4.199 3 C -0.002 4.002 4 C -0.237 4.237 5 S -0.167 6.167 6 C 0.197 3.803 7 C -0.434 4.434 8 H 0.106 0.894 9 C 0.077 3.923 10 N -0.763 5.763 11 Si 0.906 3.094 12 H -0.258 1.258 13 H -0.276 1.276 14 H -0.257 1.257 15 C -0.127 4.127 16 C -0.033 4.033 17 C -0.271 4.271 18 S 0.010 5.990 19 C -0.065 4.065 20 H 0.047 0.953 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.290 0.710 26 H 0.128 0.872 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 -1.161 -1.458 2.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.207 4.207 3 C -0.025 4.025 4 C -0.353 4.353 5 S -0.010 6.010 6 C 0.189 3.811 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.146 4.146 10 N -0.385 5.385 11 Si 0.729 3.271 12 H -0.183 1.183 13 H -0.200 1.200 14 H -0.181 1.181 15 C -0.137 4.137 16 C -0.062 4.062 17 C -0.404 4.404 18 S 0.271 5.729 19 C -0.180 4.180 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.028 0.972 25 H 0.101 0.899 26 H 0.145 0.855 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.036 -1.246 -1.473 3.597 hybrid contribution 1.803 -0.600 1.084 2.188 sum -1.233 -1.846 -0.389 2.253 Atomic orbital electron populations 1.20458 0.92861 1.00791 1.00320 1.18301 0.93917 0.90298 1.18168 1.20566 0.92826 0.95386 0.93772 1.20563 0.93888 0.93218 1.27596 1.85879 1.79650 1.24262 1.11218 1.18508 0.92417 0.87489 0.82669 1.19669 0.91228 1.12844 1.22369 0.87630 1.26083 1.01662 0.93304 0.93533 1.69902 1.39359 1.18705 1.10541 0.86355 0.81092 0.79605 0.80014 1.18261 1.20042 1.18108 1.19134 0.90488 0.93549 1.10499 1.19809 0.99790 0.91048 0.95545 1.24654 0.94735 1.01798 1.19244 1.83389 1.09621 0.99049 1.80847 1.22337 0.96252 0.94982 1.04463 0.93386 0.92875 0.93324 0.87543 0.97202 0.89930 0.85476 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.83 36.01 0.35 -1.18 15 2 C -0.20 -4.33 5.91 -104.21 -0.62 -4.94 15 3 C 0.00 -0.04 9.30 -39.63 -0.37 -0.41 15 4 C -0.24 -5.65 6.17 -38.26 -0.24 -5.88 15 5 S -0.17 -3.56 24.53 -107.50 -2.64 -6.20 15 6 C 0.20 4.99 5.51 -104.08 -0.57 4.42 15 7 C -0.43 -10.64 8.04 -38.18 -0.31 -10.95 15 8 H 0.11 2.54 7.49 -52.48 -0.39 2.15 15 9 C 0.08 1.77 3.84 -17.30 -0.07 1.70 15 10 N -0.76 -18.25 10.83 55.55 0.60 -17.64 15 11 Si 0.91 17.20 29.61 -169.99 -5.03 12.17 15 12 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 13 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 14 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 15 C -0.13 -3.14 5.51 -104.77 -0.58 -3.72 15 16 C -0.03 -0.75 8.26 -40.77 -0.34 -1.09 15 17 C -0.27 -5.56 11.11 28.83 0.32 -5.24 15 18 S 0.01 0.20 22.54 -107.50 -2.42 -2.22 15 19 C -0.06 -1.50 6.29 -38.45 -0.24 -1.74 15 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.05 0.83 8.06 -51.93 -0.42 0.41 15 22 H 0.05 0.82 7.53 -51.92 -0.39 0.43 15 23 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 24 H 0.06 1.33 9.55 96.90 0.93 2.26 15 25 H 0.29 6.32 8.30 -40.82 -0.34 5.98 15 26 H 0.13 2.90 6.08 -52.48 -0.32 2.58 15 27 H 0.15 2.53 8.06 -52.49 -0.42 2.10 15 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -25.48 259.86 -9.22 -34.70 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -1.00 Total: 4.31 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -2.65 Total: -29.03 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.60 Total: -17.64 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -5.06 Total: -8.42 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.48 -9.22 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307382077.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.278 kcal (2) G-P(sol) polarization free energy of solvation -25.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds