Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75453 * 124.60336 * 2 1 4 4 C 1.76042 * 91.64750 * 179.80704 * 3 2 1 5 5 C 1.38839 * 130.34471 * 179.58976 * 4 3 2 6 6 C 1.40399 * 119.98857 * 180.26455 * 5 4 3 7 7 C 1.40966 * 120.20769 * 180.30576 * 6 5 4 8 8 H 1.08003 * 120.00203 * 204.74025 * 7 6 5 9 9 C 1.39719 * 120.00186 * 24.72980 * 7 6 5 10 10 N 1.30981 * 120.00052 * 18.04467 * 9 7 6 11 11 Si 1.86798 * 120.00431 * 198.03863 * 9 7 6 12 12 H 1.48496 * 109.47252 * 90.00135 * 11 9 7 13 13 H 1.48501 * 109.47331 * 210.00216 * 11 9 7 14 14 H 1.48505 * 109.46971 * 330.00258 * 11 9 7 15 15 C 1.41245 * 119.58856 * 0.27820 * 6 5 4 16 16 C 1.35182 * 120.37094 * 359.97438 * 15 6 5 17 17 C 1.40333 * 109.52001 * 0.30287 * 4 3 2 18 18 C 1.33370 * 124.60665 * 179.97438 * 2 1 3 19 19 S 1.76200 * 122.18118 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46822 * 270.01865 * 1 2 3 21 21 H 1.08992 * 109.47509 * 30.02278 * 1 2 3 22 22 H 1.09003 * 109.47157 * 150.02439 * 1 2 3 23 23 H 1.08006 * 120.00520 * 0.54479 * 5 4 3 24 24 H 0.96993 * 120.00391 * 179.97438 * 10 9 7 25 25 H 1.07995 * 119.81165 * 179.97438 * 15 6 5 26 26 H 1.07998 * 119.56304 * 180.02562 * 16 15 6 27 27 H 1.34497 * 103.00308 * 270.02912 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5034 1.4442 0.0000 4 6 3.9805 0.4865 0.0059 5 6 5.3104 0.8854 0.0013 6 6 6.3320 -0.0777 0.0021 7 6 7.6837 0.3222 0.0039 8 1 8.4430 -0.3390 -0.3868 9 6 8.0413 1.5740 0.5110 10 7 7.2153 2.2244 1.2923 11 14 9.6973 2.3202 0.0750 12 1 9.5637 3.1347 -1.1594 13 1 10.1601 3.1843 1.1905 14 1 10.6848 1.2347 -0.1527 15 6 5.9968 -1.4498 0.0018 16 6 4.7017 -1.8371 0.0012 17 6 3.6545 -0.8784 0.0006 18 6 2.2645 -1.0977 0.0005 19 16 1.5700 -2.7171 0.0019 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8897 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 5.5590 1.9365 0.0016 24 1 7.4636 3.0933 1.6447 25 1 6.7797 -2.1937 0.0020 26 1 4.4603 -2.8897 0.0013 27 1 1.4506 -2.9940 1.3126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307415198.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = 12.481667 kcal Electronic energy + Delta-G solvation = -13303.310256 eV Core-core repulsion = 11049.262384 eV Total energy + Delta-G solvation = -2254.047873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02058 -37.08061 -35.11585 -32.13405 -31.35513 -29.03493 -25.99454 -24.17609 -22.66503 -21.21658 -19.49315 -18.21443 -18.03368 -16.97514 -16.39151 -15.96645 -15.35201 -15.04129 -14.48112 -14.36466 -13.91787 -13.67499 -13.27097 -13.13887 -12.88600 -12.76498 -12.54175 -12.31697 -11.76028 -11.65759 -11.40186 -11.25414 -10.92195 -10.24917 -9.15641 -9.00521 -8.75860 -8.54260 -6.38478 -0.07728 0.41367 0.83415 0.95027 1.14084 1.37407 1.41948 1.52053 1.65028 2.11526 2.16038 2.64641 3.55919 3.96379 4.30000 4.48736 4.66754 4.75639 4.86740 4.96689 5.01573 5.13205 5.20432 5.32744 5.40268 5.78507 5.82795 5.96826 6.12588 6.48299 6.76553 6.83920 8.19192 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.037633 B = 0.006595 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.840532 B = 4244.936593 C = 4895.641602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.157 4.157 3 S 0.051 5.949 4 C -0.107 4.107 5 C -0.185 4.185 6 C 0.094 3.906 7 C -0.471 4.471 8 H 0.091 0.909 9 C 0.033 3.967 10 N -0.812 5.812 11 Si 0.988 3.012 12 H -0.263 1.263 13 H -0.268 1.268 14 H -0.252 1.252 15 C -0.203 4.203 16 C -0.057 4.057 17 C -0.196 4.196 18 C -0.095 4.095 19 S -0.092 6.092 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.292 0.708 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -2.307 -1.390 7.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.276 4.276 3 S 0.313 5.687 4 C -0.223 4.223 5 C -0.211 4.211 6 C 0.089 3.911 7 C -0.500 4.500 8 H 0.109 0.891 9 C -0.184 4.184 10 N -0.437 5.437 11 Si 0.807 3.193 12 H -0.187 1.187 13 H -0.193 1.193 14 H -0.175 1.175 15 C -0.222 4.222 16 C -0.077 4.077 17 C -0.204 4.204 18 C -0.219 4.219 19 S 0.062 5.938 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.869 -1.425 -1.458 8.129 hybrid contribution 1.614 -0.047 1.128 1.970 sum -6.255 -1.472 -0.329 6.435 Atomic orbital electron populations 1.20544 0.84828 1.04700 1.03626 1.24679 1.01154 0.93918 1.07850 1.83552 0.95788 1.08971 1.80424 1.22544 0.97379 0.96202 1.06159 1.20468 0.88971 0.99259 1.12413 1.17848 0.93720 0.91411 0.88155 1.19912 0.93438 1.01627 1.35003 0.89051 1.26888 1.03387 0.96432 0.91679 1.69950 1.38655 1.13635 1.21456 0.85108 0.76419 0.78773 0.78952 1.18720 1.19254 1.17494 1.20960 0.95990 0.95650 1.09614 1.20596 0.91390 0.98053 0.97659 1.17984 0.92749 0.92484 1.17154 1.19890 0.93791 0.96160 1.12019 1.85138 1.81562 1.15638 1.11412 0.89925 0.89981 0.88347 0.87824 0.89706 0.86268 0.85310 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 9.97 71.24 0.71 -1.25 15 2 C -0.16 -5.61 6.45 24.58 0.16 -5.45 15 3 S 0.05 2.05 23.26 -56.49 -1.31 0.74 15 4 C -0.11 -5.25 6.45 22.92 0.15 -5.10 15 5 C -0.18 -9.94 8.71 22.94 0.20 -9.74 15 6 C 0.09 5.01 5.56 -21.35 -0.12 4.89 15 7 C -0.47 -24.18 9.02 23.30 0.21 -23.97 15 8 H 0.09 4.39 7.91 -2.91 -0.02 4.37 15 9 C 0.03 1.60 5.12 85.18 0.44 2.03 15 10 N -0.81 -41.52 10.97 21.79 0.24 -41.29 15 11 Si 0.99 36.30 29.59 68.60 2.03 38.33 15 12 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 13 H -0.27 -9.41 7.11 99.48 0.71 -8.71 15 14 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 15 C -0.20 -9.66 9.68 22.30 0.22 -9.45 15 16 C -0.06 -2.54 9.67 22.49 0.22 -2.32 15 17 C -0.20 -9.05 5.88 -21.24 -0.12 -9.17 15 18 C -0.09 -3.70 6.05 21.77 0.13 -3.57 15 19 S -0.09 -2.87 24.17 -56.49 -1.37 -4.23 15 20 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.10 2.24 7.29 -2.39 -0.02 2.22 15 23 H 0.10 5.84 6.16 -2.91 -0.02 5.82 15 24 H 0.29 13.46 8.30 -92.71 -0.77 12.69 15 25 H 0.12 5.11 8.06 -2.91 -0.02 5.08 15 26 H 0.13 4.97 7.77 -2.91 -0.02 4.95 15 27 H 0.07 2.10 9.07 73.35 0.67 2.77 15 Total: -1.00 -57.32 262.74 3.65 -53.68 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.87 Total: 15.88 kcal Atomic # 6 Polarization: -65.28 SS G_CDS: 2.18 Total: -63.10 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.24 Total: -41.29 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.68 Total: -3.49 kcal Total: -57.32 3.65 -53.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307415198.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.157 kcal (2) G-P(sol) polarization free energy of solvation -57.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds