Wall clock time and date at job start Mon Mar 30 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31940 * 124.36721 * 2 1 4 4 C 1.45420 * 114.89621 * 179.97438 * 3 2 1 5 5 C 1.41794 * 128.97124 * 180.02562 * 4 3 2 6 6 C 1.37085 * 121.09951 * 179.97438 * 5 4 3 7 7 C 1.39138 * 120.64807 * 359.97438 * 6 5 4 8 8 S 1.76200 * 120.18568 * 180.02562 * 7 6 5 9 9 C 1.41261 * 119.62591 * 0.02562 * 7 6 5 10 10 C 1.40630 * 120.15890 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99639 * 38.95119 * 10 9 7 12 12 C 1.39799 * 120.00153 * 218.94065 * 10 9 7 13 13 N 1.30996 * 119.99637 * 20.94313 * 12 10 9 14 14 Si 1.86791 * 119.99996 * 200.94091 * 12 10 9 15 15 H 1.48508 * 109.47356 * 60.00008 * 14 12 10 16 16 H 1.48499 * 109.47322 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47325 * 300.00318 * 14 12 10 18 18 C 1.39175 * 111.86882 * 0.02562 * 4 3 2 19 19 S 1.75307 * 124.36243 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47289 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47380 * 299.99530 * 1 2 3 22 22 H 1.09005 * 109.47149 * 59.99668 * 1 2 3 23 23 H 1.08004 * 122.55451 * 359.96437 * 3 2 1 24 24 H 1.08000 * 119.45058 * 359.93756 * 5 4 3 25 25 H 1.08003 * 119.67266 * 179.97438 * 6 5 4 26 26 H 1.41002 * 99.99727 * 269.97486 * 8 7 6 27 27 H 0.97007 * 119.99597 * 181.96102 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2517 1.0891 0.0000 4 6 3.6861 0.8498 0.0006 5 6 4.7471 1.7904 0.0012 6 6 6.0557 1.3818 0.0023 7 6 6.3759 0.0278 0.0032 8 16 8.0620 -0.4839 0.0052 9 6 5.3416 -0.9344 0.0026 10 6 5.6525 -2.3059 0.0030 11 1 6.4809 -2.6716 0.5917 12 6 4.8893 -3.1959 -0.7583 13 7 4.1760 -2.7528 -1.7638 14 14 4.8866 -5.0168 -0.3419 15 1 4.3846 -5.2073 1.0427 16 1 4.0039 -5.7406 -1.2918 17 1 6.2686 -5.5503 -0.4450 18 6 3.9849 -0.5095 0.0005 19 16 2.4964 -1.4471 0.0006 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8284 2.0827 -0.0006 24 1 4.5206 2.8464 0.0003 25 1 6.8458 2.1182 0.0023 26 1 8.2975 -0.5562 -1.3831 27 1 3.6242 -3.3659 -2.2744 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307483673.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:22 Heat of formation + Delta-G solvation = 25.339716 kcal Electronic energy + Delta-G solvation = -13644.774590 eV Core-core repulsion = 11391.284285 eV Total energy + Delta-G solvation = -2253.490306 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.00908 -35.12946 -33.54922 -30.33222 -30.01293 -25.91772 -25.47936 -22.19430 -20.76864 -19.25528 -17.73016 -16.59831 -15.51522 -15.19996 -14.40015 -14.28656 -13.75792 -13.41575 -12.98402 -12.73725 -12.27746 -12.17344 -11.62788 -11.52574 -11.32866 -11.02712 -10.80500 -10.66580 -10.18982 -9.83144 -9.64290 -9.42111 -8.98324 -8.28665 -7.27252 -7.14839 -6.91743 -6.33198 -4.66508 1.72778 2.61758 2.69567 2.87130 3.00097 3.02487 3.09845 3.36734 3.41596 3.82614 3.87300 4.43410 5.21536 5.35805 5.68364 5.85095 5.97705 6.08726 6.19431 6.35468 6.67718 6.75720 6.93542 7.02846 7.11946 7.39365 7.51940 7.71766 7.93549 8.27561 8.48618 8.61519 9.91761 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.013482 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.280934 B = 2076.351392 C = 3596.560115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.202 4.202 3 C -0.141 4.141 4 C -0.038 4.038 5 C -0.211 4.211 6 C -0.034 4.034 7 C -0.217 4.217 8 S -0.167 6.167 9 C 0.185 3.815 10 C -0.449 4.449 11 H 0.103 0.897 12 C 0.070 3.930 13 N -0.763 5.763 14 Si 0.902 3.098 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.160 4.160 19 S 0.120 5.880 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 1.501 1.490 4.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.318 4.318 3 C -0.173 4.173 4 C -0.046 4.046 5 C -0.234 4.234 6 C -0.057 4.057 7 C -0.334 4.334 8 S -0.010 6.010 9 C 0.177 3.823 10 C -0.477 4.477 11 H 0.121 0.879 12 C -0.151 4.151 13 N -0.387 5.387 14 Si 0.725 3.275 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.278 4.278 19 S 0.387 5.613 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.029 0.971 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.829 -0.427 1.498 4.134 hybrid contribution -0.622 1.054 -1.047 1.611 sum -4.451 0.627 0.451 4.518 Atomic orbital electron populations 1.20236 0.89292 1.02023 1.01819 1.24262 0.99473 0.99391 1.08692 1.20672 0.91992 0.97986 1.06687 1.19094 0.92029 0.92857 1.00652 1.20095 0.91132 0.96404 1.15743 1.20654 0.95103 0.94157 0.95778 1.20674 0.92543 0.94217 1.25966 1.85843 1.11778 1.92097 1.11270 1.17039 0.87205 0.92986 0.85072 1.19616 1.13499 0.91010 1.23605 0.87936 1.25981 0.93498 1.02167 0.93498 1.69878 1.18843 1.38855 1.11147 0.86388 0.79742 0.81257 0.80077 1.18194 1.20008 1.18434 1.22587 0.96826 0.94255 1.14172 1.83744 0.94884 1.06192 1.76498 0.92067 0.91550 0.91552 0.86100 0.88339 0.87736 0.97071 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.32 36.00 0.37 -0.72 15 2 C -0.20 -3.93 6.39 -36.22 -0.23 -4.16 15 3 C -0.14 -2.87 10.22 -38.64 -0.39 -3.27 15 4 C -0.04 -0.89 6.04 -105.33 -0.64 -1.52 15 5 C -0.21 -4.65 10.07 -38.64 -0.39 -5.04 15 6 C -0.03 -0.77 9.72 -39.67 -0.39 -1.16 15 7 C -0.22 -5.30 6.19 -38.10 -0.24 -5.54 15 8 S -0.17 -3.65 24.52 -107.50 -2.64 -6.28 15 9 C 0.19 4.83 5.38 -106.34 -0.57 4.26 15 10 C -0.45 -11.49 8.05 -38.10 -0.31 -11.79 15 11 H 0.10 2.59 7.46 -52.48 -0.39 2.20 15 12 C 0.07 1.68 4.25 -17.32 -0.07 1.61 15 13 N -0.76 -18.90 10.69 55.54 0.59 -18.31 15 14 Si 0.90 18.25 29.61 -169.99 -5.03 13.22 15 15 H -0.26 -5.18 7.11 56.52 0.40 -4.77 15 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 18 C -0.16 -4.03 5.73 -37.73 -0.22 -4.25 15 19 S 0.12 2.68 19.82 -107.50 -2.13 0.55 15 20 H 0.06 0.84 8.13 -51.93 -0.42 0.41 15 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.12 2.11 8.06 -52.48 -0.42 1.68 15 24 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.10 2.05 8.06 -52.48 -0.42 1.63 15 26 H 0.06 1.39 9.55 96.90 0.93 2.32 15 27 H 0.29 6.60 8.30 -40.82 -0.34 6.26 15 LS Contribution 262.22 15.07 3.95 3.95 Total: -1.00 -26.72 262.22 -9.46 -36.18 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.14 Total: 2.27 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -3.07 Total: -31.58 kcal Atomic # 7 Polarization: -18.90 SS G_CDS: 0.59 Total: -18.31 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -4.77 Total: -5.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.72 -9.46 -36.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307483673.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.518 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds