Wall clock time and date at job start Mon Mar 30 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31940 * 124.36721 * 2 1 4 4 C 1.45420 * 114.89621 * 179.97438 * 3 2 1 5 5 C 1.41794 * 128.97124 * 180.02562 * 4 3 2 6 6 C 1.37085 * 121.09951 * 179.97438 * 5 4 3 7 7 C 1.39138 * 120.64807 * 359.97438 * 6 5 4 8 8 S 1.76200 * 120.18568 * 180.02562 * 7 6 5 9 9 C 1.41261 * 119.62591 * 0.02562 * 7 6 5 10 10 C 1.40630 * 120.15890 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99639 * 38.95119 * 10 9 7 12 12 C 1.39799 * 120.00153 * 218.94065 * 10 9 7 13 13 N 1.30996 * 119.99637 * 20.94313 * 12 10 9 14 14 Si 1.86791 * 119.99996 * 200.94091 * 12 10 9 15 15 H 1.48508 * 109.47356 * 60.00008 * 14 12 10 16 16 H 1.48499 * 109.47322 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47325 * 300.00318 * 14 12 10 18 18 C 1.39175 * 111.86882 * 0.02562 * 4 3 2 19 19 S 1.75307 * 124.36243 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47289 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47380 * 299.99530 * 1 2 3 22 22 H 1.09005 * 109.47149 * 59.99668 * 1 2 3 23 23 H 1.08004 * 122.55451 * 359.96437 * 3 2 1 24 24 H 1.08000 * 119.45058 * 359.93756 * 5 4 3 25 25 H 1.08003 * 119.67266 * 179.97438 * 6 5 4 26 26 H 1.41002 * 99.99727 * 269.97486 * 8 7 6 27 27 H 0.97007 * 119.99597 * 181.96102 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2517 1.0891 0.0000 4 6 3.6861 0.8498 0.0006 5 6 4.7471 1.7904 0.0012 6 6 6.0557 1.3818 0.0023 7 6 6.3759 0.0278 0.0032 8 16 8.0620 -0.4839 0.0052 9 6 5.3416 -0.9344 0.0026 10 6 5.6525 -2.3059 0.0030 11 1 6.4809 -2.6716 0.5917 12 6 4.8893 -3.1959 -0.7583 13 7 4.1760 -2.7528 -1.7638 14 14 4.8866 -5.0168 -0.3419 15 1 4.3846 -5.2073 1.0427 16 1 4.0039 -5.7406 -1.2918 17 1 6.2686 -5.5503 -0.4450 18 6 3.9849 -0.5095 0.0005 19 16 2.4964 -1.4471 0.0006 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8284 2.0827 -0.0006 24 1 4.5206 2.8464 0.0003 25 1 6.8458 2.1182 0.0023 26 1 8.2975 -0.5562 -1.3831 27 1 3.6242 -3.3659 -2.2744 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307483673.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:22 Heat of formation + Delta-G solvation = 12.644516 kcal Electronic energy + Delta-G solvation = -13645.325096 eV Core-core repulsion = 11391.284285 eV Total energy + Delta-G solvation = -2254.040811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72293 -36.77409 -35.27591 -31.93381 -31.71499 -27.46778 -27.23524 -23.91066 -22.49101 -20.85694 -19.50103 -18.35148 -17.24298 -16.89559 -16.10461 -15.92929 -15.43641 -14.80068 -14.59631 -14.33776 -13.88137 -13.61925 -13.28507 -13.11959 -12.96511 -12.68242 -12.47631 -12.23114 -11.82395 -11.54437 -11.38560 -11.11963 -10.70284 -10.04473 -8.99573 -8.92192 -8.65914 -8.07599 -6.53562 0.02315 0.86820 1.04336 1.20124 1.34518 1.40932 1.46268 1.67495 1.70656 2.09120 2.16401 2.65265 3.39528 3.91577 4.41131 4.47911 4.62342 4.68057 4.79715 4.92734 5.05087 5.17899 5.21143 5.31490 5.41995 5.70970 5.71979 5.96390 6.19891 6.40268 6.66864 6.77331 8.15790 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.013482 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.280934 B = 2076.351392 C = 3596.560115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.185 4.185 3 C -0.155 4.155 4 C -0.055 4.055 5 C -0.211 4.211 6 C -0.042 4.042 7 C -0.247 4.247 8 S -0.146 6.146 9 C 0.156 3.844 10 C -0.478 4.478 11 H 0.093 0.907 12 C 0.041 3.959 13 N -0.790 5.790 14 Si 0.958 3.042 15 H -0.257 1.257 16 H -0.262 1.262 17 H -0.257 1.257 18 C -0.197 4.197 19 S 0.091 5.909 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.155 0.845 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.061 0.939 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 2.157 1.603 6.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.302 4.302 3 C -0.186 4.186 4 C -0.064 4.064 5 C -0.234 4.234 6 C -0.064 4.064 7 C -0.364 4.364 8 S 0.011 5.989 9 C 0.148 3.852 10 C -0.507 4.507 11 H 0.111 0.889 12 C -0.178 4.178 13 N -0.415 5.415 14 Si 0.778 3.222 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.181 1.181 18 C -0.315 4.315 19 S 0.357 5.643 20 H 0.087 0.913 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.173 0.827 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.026 0.974 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.271 0.249 1.611 5.517 hybrid contribution -0.205 0.973 -1.072 1.462 sum -5.476 1.222 0.539 5.636 Atomic orbital electron populations 1.20407 0.85498 1.03336 1.04004 1.24783 1.01669 0.97328 1.06376 1.20937 0.90534 0.99859 1.07281 1.19665 0.94112 0.92570 1.00056 1.20532 0.90803 0.97889 1.14131 1.20981 0.96240 0.93916 0.95309 1.21118 0.93564 0.95241 1.26499 1.85596 1.10180 1.92264 1.10834 1.17434 0.88379 0.93681 0.85744 1.19690 1.14404 0.91698 1.24873 0.88911 1.26580 0.92791 1.05552 0.92845 1.69909 1.19508 1.40237 1.11803 0.85555 0.79952 0.76683 0.79965 1.18110 1.18649 1.18142 1.22875 0.97344 0.95652 1.15653 1.83624 0.95021 1.08452 1.77155 0.91288 0.88968 0.89454 0.82734 0.85197 0.85193 0.97408 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.32 71.23 0.74 -1.15 15 2 C -0.18 -6.80 6.39 24.82 0.16 -6.64 15 3 C -0.16 -5.95 10.22 23.25 0.24 -5.71 15 4 C -0.06 -2.54 6.04 -20.33 -0.12 -2.66 15 5 C -0.21 -9.02 10.07 22.88 0.23 -8.79 15 6 C -0.04 -1.86 9.72 22.21 0.22 -1.64 15 7 C -0.25 -12.24 6.19 23.23 0.14 -12.10 15 8 S -0.15 -6.41 24.52 -56.49 -1.38 -7.79 15 9 C 0.16 8.31 5.38 -20.98 -0.11 8.20 15 10 C -0.48 -25.18 8.05 23.23 0.19 -24.99 15 11 H 0.09 4.87 7.46 -2.91 -0.02 4.85 15 12 C 0.04 2.01 4.25 85.20 0.36 2.37 15 13 N -0.79 -39.73 10.69 21.81 0.23 -39.50 15 14 Si 0.96 37.61 29.61 68.60 2.03 39.64 15 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 16 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 17 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 18 C -0.20 -10.04 5.73 23.47 0.13 -9.90 15 19 S 0.09 4.07 19.82 -56.49 -1.12 2.95 15 20 H 0.07 1.66 8.13 -2.39 -0.02 1.64 15 21 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.09 1.92 8.14 -2.38 -0.02 1.90 15 23 H 0.16 4.79 8.06 -2.91 -0.02 4.76 15 24 H 0.13 4.61 8.06 -2.91 -0.02 4.59 15 25 H 0.13 4.91 8.06 -2.91 -0.02 4.88 15 26 H 0.06 2.67 9.55 73.80 0.70 3.38 15 27 H 0.30 13.56 8.30 -92.70 -0.77 12.79 15 Total: -1.00 -58.20 262.22 3.84 -54.36 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.91 Total: 13.35 kcal Atomic # 6 Polarization: -65.18 SS G_CDS: 2.17 Total: -63.01 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.23 Total: -39.50 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.50 Total: -4.84 kcal Total: -58.20 3.84 -54.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307483673.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.007 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds