Wall clock time and date at job start Mon Mar 30 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34163 * 122.20121 * 2 1 4 4 S 1.76197 * 124.73610 * 359.71288 * 3 2 1 5 5 S 1.75507 * 110.52645 * 179.97438 * 3 2 1 6 6 C 1.76062 * 91.56631 * 359.97438 * 5 3 2 7 7 C 1.39227 * 130.49303 * 179.97438 * 6 5 3 8 8 C 1.38369 * 121.50750 * 180.02562 * 7 6 5 9 9 C 1.37473 * 121.12813 * 0.02562 * 8 7 6 10 10 C 1.40377 * 120.11989 * 0.02562 * 9 8 7 11 11 C 1.40509 * 120.42300 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00243 * 217.92929 * 11 10 9 13 13 C 1.39843 * 119.99867 * 37.93347 * 11 10 9 14 14 N 1.30941 * 120.00030 * 8.36372 * 13 11 10 15 15 Si 1.86800 * 120.00195 * 188.36438 * 13 11 10 16 16 H 1.48500 * 109.46968 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47241 * 119.99971 * 15 13 11 18 18 H 1.48499 * 109.47285 * 240.00183 * 15 13 11 19 19 C 1.39525 * 122.19287 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.47305 * 96.61905 * 1 2 3 21 21 H 1.08997 * 109.47469 * 216.62395 * 1 2 3 22 22 H 1.08998 * 109.46594 * 336.62285 * 1 2 3 23 23 H 1.41000 * 99.99982 * 90.00260 * 4 3 2 24 24 H 1.07996 * 119.25274 * 0.03103 * 7 6 5 25 25 H 1.08001 * 119.43764 * 180.02562 * 8 7 6 26 26 H 1.08000 * 119.94598 * 180.02562 * 9 8 7 27 27 H 0.96996 * 120.00295 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2219 1.1353 0.0000 4 16 1.5317 2.7564 -0.0073 5 16 3.9407 0.7801 0.0007 6 6 3.6317 -0.9532 0.0018 7 6 4.5154 -2.0291 0.0023 8 6 4.0627 -3.3366 0.0026 9 6 2.7182 -3.6232 0.0020 10 6 1.7761 -2.5826 0.0004 11 6 0.4004 -2.8682 0.0002 12 1 -0.2782 -2.2564 -0.5757 13 6 -0.0903 -3.9448 0.7458 14 7 0.7005 -4.5846 1.5704 15 14 -1.8738 -4.4701 0.5655 16 1 -2.5511 -3.5917 -0.4218 17 1 -1.9301 -5.8781 0.0968 18 1 -2.5581 -4.3578 1.8786 19 6 2.2504 -1.1807 0.0005 20 1 -0.3634 -0.1185 -1.0208 21 1 -0.3634 -0.8247 0.6130 22 1 -0.3632 0.9433 0.4078 23 1 1.4300 2.9854 1.3803 24 1 5.5785 -1.8388 0.0026 25 1 4.7779 -4.1459 0.0035 26 1 2.3861 -4.6509 0.0026 27 1 0.3603 -5.3315 2.0873 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307506186.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:47 Heat of formation + Delta-G solvation = 27.175244 kcal Electronic energy + Delta-G solvation = -13619.620937 eV Core-core repulsion = 11366.210226 eV Total energy + Delta-G solvation = -2253.410711 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.32670 -34.88216 -33.95771 -30.18015 -28.83611 -27.10859 -25.33329 -21.98861 -21.27620 -18.77997 -18.16201 -16.56578 -15.89626 -15.31934 -14.65444 -14.30534 -13.92709 -13.32482 -13.01326 -12.66154 -12.00948 -11.88199 -11.68847 -11.42978 -11.39048 -11.14500 -10.77650 -10.64742 -10.34440 -9.97825 -9.61024 -9.54215 -9.45779 -8.16972 -7.59958 -7.40610 -7.11314 -6.73503 -4.66131 1.44240 2.19553 2.54799 2.67878 2.89692 2.94156 2.95631 2.97774 3.11753 3.50107 3.67212 4.32144 5.23001 5.87846 6.00784 6.12474 6.20850 6.38449 6.42900 6.70676 6.75605 6.76855 6.97215 7.08371 7.20253 7.55249 7.64767 7.72488 7.83062 8.24280 8.41587 8.54643 9.81836 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.008998 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.316802 B = 3111.153471 C = 4195.168408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.048 3.952 3 C -0.289 4.289 4 S -0.094 6.094 5 S 0.020 5.980 6 C -0.056 4.056 7 C -0.224 4.224 8 C -0.056 4.056 9 C -0.179 4.179 10 C 0.167 3.833 11 C -0.434 4.434 12 H 0.097 0.903 13 C 0.070 3.930 14 N -0.776 5.776 15 Si 0.916 3.084 16 H -0.255 1.255 17 H -0.268 1.268 18 H -0.270 1.270 19 C -0.194 4.194 20 H 0.072 0.928 21 H 0.091 0.909 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 2.953 -1.072 3.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.034 3.966 3 C -0.515 4.515 4 S 0.061 5.939 5 S 0.282 5.718 6 C -0.173 4.173 7 C -0.250 4.250 8 C -0.077 4.077 9 C -0.200 4.200 10 C 0.161 3.839 11 C -0.462 4.462 12 H 0.115 0.885 13 C -0.151 4.151 14 N -0.399 5.399 15 Si 0.739 3.261 16 H -0.178 1.178 17 H -0.193 1.193 18 H -0.195 1.195 19 C -0.201 4.201 20 H 0.090 0.910 21 H 0.109 0.891 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.300 4.640 -1.126 4.784 hybrid contribution -1.358 -2.021 1.088 2.667 sum -1.659 2.619 -0.038 3.100 Atomic orbital electron populations 1.21031 0.90467 1.02887 1.02713 1.18980 0.96482 0.90626 0.90531 1.23855 0.97448 0.97221 1.33002 1.86103 1.81909 1.14788 1.11122 1.83548 1.06089 1.00012 1.82154 1.22346 0.96806 0.95274 1.02868 1.19580 0.96403 0.91086 1.17977 1.20584 0.95826 0.94499 0.96832 1.20970 0.91472 0.98895 1.08699 1.18506 0.93322 0.87484 0.84544 1.19814 0.93395 1.09826 1.23193 0.88515 1.26064 1.01070 0.94433 0.93493 1.69834 1.37645 1.16021 1.16402 0.86102 0.80767 0.79610 0.79605 1.17816 1.19325 1.19524 1.19029 0.90716 0.93568 1.16763 0.90980 0.89060 0.92220 0.96632 0.88733 0.88287 0.86485 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.35 36.01 0.30 -1.86 15 2 C 0.05 1.07 5.85 -105.58 -0.62 0.46 15 3 C -0.29 -6.08 6.71 29.30 0.20 -5.89 15 4 S -0.09 -1.65 24.83 -107.50 -2.67 -4.32 15 5 S 0.02 0.43 23.28 -107.50 -2.50 -2.08 15 6 C -0.06 -1.31 6.47 -38.56 -0.25 -1.56 15 7 C -0.22 -4.98 10.01 -39.17 -0.39 -5.37 15 8 C -0.06 -1.23 9.96 -39.81 -0.40 -1.62 15 9 C -0.18 -4.26 8.58 -39.06 -0.34 -4.59 15 10 C 0.17 4.12 5.62 -104.24 -0.59 3.53 15 11 C -0.43 -10.16 6.98 -38.13 -0.27 -10.42 15 12 H 0.10 2.14 5.84 -52.49 -0.31 1.83 15 13 C 0.07 1.56 5.24 -17.33 -0.09 1.47 15 14 N -0.78 -18.07 11.37 55.54 0.63 -17.44 15 15 Si 0.92 16.61 29.57 -169.99 -5.03 11.58 15 16 H -0.25 -4.54 7.11 56.52 0.40 -4.14 15 17 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 18 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 19 C -0.19 -4.69 6.01 -104.76 -0.63 -5.31 15 20 H 0.07 1.30 7.97 -51.93 -0.41 0.89 15 21 H 0.09 1.83 5.83 -51.93 -0.30 1.53 15 22 H 0.06 1.03 7.03 -51.93 -0.37 0.67 15 23 H 0.07 1.14 9.55 96.90 0.93 2.06 15 24 H 0.09 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.10 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.12 2.80 6.85 -52.49 -0.36 2.44 15 27 H 0.29 6.04 8.30 -40.82 -0.34 5.71 15 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -25.01 257.63 -9.55 -34.56 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -0.80 Total: 4.99 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -3.06 Total: -31.18 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.63 Total: -17.44 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -5.17 Total: -6.40 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.01 -9.55 -34.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307506186.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.732 kcal (2) G-P(sol) polarization free energy of solvation -25.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds