Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37553 * 119.91429 * 2 1 4 4 C 1.39641 * 120.54768 * 180.02562 * 3 2 1 5 5 S 1.76028 * 130.10916 * 180.02562 * 4 3 2 6 6 C 1.75446 * 91.79763 * 179.97438 * 5 4 3 7 7 C 1.39918 * 124.82402 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00127 * 173.24504 * 7 6 5 9 9 C 1.40185 * 119.99625 * 353.24416 * 7 6 5 10 10 N 1.30755 * 120.00450 * 6.57319 * 9 7 6 11 11 Si 1.86801 * 119.99722 * 186.57602 * 9 7 6 12 12 H 1.48509 * 109.47134 * 94.98539 * 11 9 7 13 13 H 1.48493 * 109.47230 * 214.98538 * 11 9 7 14 14 H 1.48500 * 109.47263 * 334.98789 * 11 9 7 15 15 C 1.36940 * 110.34984 * 359.97438 * 6 5 4 16 16 C 1.39793 * 115.02923 * 0.02562 * 15 6 5 17 17 C 1.41896 * 128.42171 * 180.02562 * 16 15 6 18 18 C 1.37569 * 120.29635 * 179.72382 * 17 16 15 19 19 S 1.76205 * 119.83013 * 180.27481 * 18 17 16 20 20 H 1.09003 * 109.46910 * 89.99777 * 1 2 3 21 21 H 1.09000 * 109.47273 * 209.99729 * 1 2 3 22 22 H 1.08997 * 109.46910 * 329.99787 * 1 2 3 23 23 H 1.07995 * 119.72783 * 359.97438 * 3 2 1 24 24 H 0.97004 * 120.00261 * 180.02562 * 10 9 7 25 25 H 1.08004 * 122.48428 * 179.97438 * 15 6 5 26 26 H 1.07994 * 119.84569 * 359.97438 * 17 16 15 27 27 H 1.34500 * 102.99882 * 270.25019 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1930 1.1923 0.0000 4 6 3.5893 1.2077 -0.0005 5 16 4.7084 2.5665 -0.0001 6 6 6.0970 1.4941 -0.0005 7 6 7.4314 1.9148 0.0001 8 1 8.2257 1.1913 0.1097 9 6 7.7374 3.2755 -0.1417 10 7 6.7784 4.1643 -0.1453 11 14 9.5152 3.8188 -0.3255 12 1 9.8436 3.9583 -1.7671 13 1 9.7064 5.1250 0.3544 14 1 10.4088 2.8049 0.2899 15 6 5.6891 0.1868 -0.0005 16 6 4.3038 -0.0005 -0.0006 17 6 3.5789 -1.2203 0.0000 18 6 2.2033 -1.2101 0.0054 19 16 1.3155 -2.7322 0.0134 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6472 2.1241 -0.0004 24 1 6.9902 5.1059 -0.2438 25 1 6.3861 -0.6382 -0.0011 26 1 4.1096 -2.1609 0.0001 27 1 1.1628 -3.0002 -1.2958 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307508127.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = -2.554921 kcal Electronic energy + Delta-G solvation = -13146.258007 eV Core-core repulsion = 10891.558099 eV Total energy + Delta-G solvation = -2254.699908 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02782 -36.94577 -35.34568 -32.25838 -31.47621 -28.96414 -25.97086 -24.13711 -22.77044 -21.21421 -19.76247 -18.49945 -17.54558 -17.04935 -16.40811 -15.89997 -15.32424 -14.76811 -14.61380 -14.45852 -13.85631 -13.70177 -13.28781 -13.14942 -13.07143 -12.77192 -12.42438 -12.07418 -11.93107 -11.78678 -11.55929 -10.98782 -10.89862 -10.24921 -9.18979 -8.98856 -8.95768 -8.32760 -6.58475 0.15235 0.24471 0.81391 1.27232 1.33358 1.36450 1.53331 1.74710 1.83086 1.95127 2.11954 2.76893 3.14756 4.01068 4.22865 4.53931 4.66427 4.76578 4.85587 4.90242 4.94499 5.16495 5.27056 5.35146 5.47108 5.62517 5.70213 5.83827 6.01577 6.19840 6.39584 6.51886 7.92131 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.052773 B = 0.005649 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.450287 B = 4955.216883 C = 5460.073683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.118 4.118 3 C -0.069 4.069 4 C -0.260 4.260 5 S 0.131 5.869 6 C 0.026 3.974 7 C -0.414 4.414 8 H 0.103 0.897 9 C 0.019 3.981 10 N -0.797 5.797 11 Si 1.013 2.987 12 H -0.258 1.258 13 H -0.258 1.258 14 H -0.253 1.253 15 C -0.391 4.391 16 C -0.017 4.017 17 C -0.108 4.108 18 C -0.102 4.102 19 S -0.118 6.118 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.129 0.871 24 H 0.314 0.686 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -1.447 -0.670 4.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.375 4.375 5 S 0.391 5.609 6 C -0.094 4.094 7 C -0.447 4.447 8 H 0.121 0.879 9 C -0.201 4.201 10 N -0.423 5.423 11 Si 0.831 3.169 12 H -0.182 1.182 13 H -0.182 1.182 14 H -0.177 1.177 15 C -0.416 4.416 16 C -0.027 4.027 17 C -0.130 4.130 18 C -0.216 4.216 19 S 0.039 5.961 20 H 0.087 0.913 21 H 0.105 0.895 22 H 0.092 0.908 23 H 0.146 0.854 24 H 0.127 0.873 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.111 -0.468 -0.444 5.152 hybrid contribution 1.545 -0.610 -1.148 2.019 sum -3.566 -1.077 -1.592 4.051 Atomic orbital electron populations 1.20793 0.88441 1.03975 1.02546 1.19995 0.97288 0.90852 1.04226 1.20352 0.90524 0.97906 1.00553 1.24075 0.99153 1.00426 1.13853 1.84579 0.93473 1.04102 1.78703 1.21768 0.97504 0.94707 0.95383 1.19686 0.91769 0.94428 1.38792 0.87933 1.27295 1.06209 0.95414 0.91151 1.68666 1.36703 1.05186 1.31788 0.84674 0.73493 0.78832 0.79886 1.18238 1.18153 1.17655 1.19717 0.93243 0.95306 1.33315 1.18226 0.93159 0.92951 0.98372 1.21374 0.92979 0.96268 1.02368 1.20724 0.94689 0.95379 1.10846 1.85291 1.73624 1.25270 1.11899 0.91277 0.89525 0.90805 0.85354 0.87276 0.87752 0.85896 0.95989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 9.57 71.24 0.68 -2.06 15 2 C -0.12 -4.37 5.90 -19.69 -0.12 -4.49 15 3 C -0.07 -2.85 9.69 22.45 0.22 -2.63 15 4 C -0.26 -12.53 6.47 23.13 0.15 -12.39 15 5 S 0.13 6.52 20.16 -56.49 -1.14 5.38 15 6 C 0.03 1.36 6.10 22.37 0.14 1.50 15 7 C -0.41 -20.70 9.26 23.15 0.21 -20.49 15 8 H 0.10 4.87 7.86 -2.91 -0.02 4.85 15 9 C 0.02 0.83 5.49 85.33 0.47 1.30 15 10 N -0.80 -36.66 10.62 21.87 0.23 -36.43 15 11 Si 1.01 33.25 29.57 68.60 2.03 35.28 15 12 H -0.26 -8.22 7.11 99.48 0.71 -7.51 15 13 H -0.26 -7.88 7.11 99.48 0.71 -7.17 15 14 H -0.25 -8.14 7.11 99.48 0.71 -7.43 15 15 C -0.39 -20.58 10.14 22.34 0.23 -20.35 15 16 C -0.02 -0.87 5.85 -21.48 -0.13 -1.00 15 17 C -0.11 -4.68 9.80 23.02 0.23 -4.45 15 18 C -0.10 -3.93 6.08 22.44 0.14 -3.80 15 19 S -0.12 -3.58 23.94 -56.49 -1.35 -4.93 15 20 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.09 2.20 6.75 -2.39 -0.02 2.19 15 22 H 0.07 1.78 8.08 -2.39 -0.02 1.76 15 23 H 0.13 4.62 8.06 -2.91 -0.02 4.59 15 24 H 0.31 12.62 8.29 -92.71 -0.77 11.85 15 25 H 0.10 5.31 8.06 -2.91 -0.02 5.29 15 26 H 0.12 4.95 8.06 -2.91 -0.02 4.93 15 27 H 0.08 2.11 9.07 73.35 0.67 2.78 15 Total: -1.00 -55.61 262.34 3.85 -51.75 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.87 Total: 17.81 kcal Atomic # 6 Polarization: -71.08 SS G_CDS: 2.22 Total: -68.86 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.23 Total: -36.43 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.49 Total: 0.44 kcal Total: -55.61 3.85 -51.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307508127.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.198 kcal (2) G-P(sol) polarization free energy of solvation -55.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds