Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36952 * 122.48824 * 2 1 4 4 C 1.39961 * 124.85039 * 0.02562 * 3 2 1 5 5 H 1.08001 * 119.99429 * 353.34645 * 4 3 2 6 6 C 1.40162 * 120.00413 * 173.34275 * 4 3 2 7 7 N 1.30772 * 119.99646 * 6.62838 * 6 4 3 8 8 Si 1.86800 * 120.00141 * 186.62189 * 6 4 3 9 9 H 1.48501 * 109.46861 * 94.99041 * 8 6 4 10 10 H 1.48506 * 109.47123 * 214.98639 * 8 6 4 11 11 H 1.48494 * 109.47027 * 334.99057 * 8 6 4 12 12 S 1.75464 * 110.30386 * 179.97438 * 3 2 1 13 13 C 1.75973 * 91.77567 * 0.02562 * 12 3 2 14 14 C 1.39809 * 122.48878 * 179.97438 * 2 1 3 15 15 C 1.42083 * 128.48198 * 0.04266 * 14 2 1 16 16 C 1.35921 * 120.62779 * 180.25576 * 15 14 2 17 17 C 1.38882 * 120.72598 * 359.55143 * 16 15 14 18 18 C 1.38346 * 120.13534 * 0.38233 * 17 16 15 19 19 S 1.76205 * 119.92748 * 179.83171 * 18 17 16 20 20 H 1.08998 * 109.47426 * 270.01957 * 1 2 3 21 21 H 1.09004 * 109.47081 * 30.02351 * 1 2 3 22 22 H 1.08994 * 109.47282 * 150.01871 * 1 2 3 23 23 H 0.97000 * 119.99701 * 179.97438 * 7 6 4 24 24 H 1.07996 * 119.68873 * 359.97438 * 15 14 2 25 25 H 1.08004 * 119.63812 * 179.72302 * 16 15 14 26 26 H 1.07999 * 119.92959 * 180.21780 * 17 16 15 27 27 H 1.34492 * 102.99850 * 270.02636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.1552 0.0000 4 6 1.7033 2.4468 0.0005 5 1 0.6379 2.5871 -0.1074 6 6 2.5459 3.5580 0.1412 7 7 3.8438 3.3985 0.1417 8 14 1.8147 5.2668 0.3278 9 1 1.7128 5.6068 1.7697 10 1 2.6881 6.2560 -0.3534 11 1 0.4622 5.2961 -0.2846 12 16 3.9577 0.7849 0.0007 13 6 3.6397 -0.9459 0.0002 14 6 2.2579 -1.1793 0.0005 15 6 1.7947 -2.5225 0.0003 16 6 2.6745 -3.5584 0.0061 17 6 4.0439 -3.3264 0.0031 18 6 4.5288 -2.0308 0.0020 19 16 6.2671 -1.7427 0.0026 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 4.4269 4.1676 0.2386 24 1 0.7333 -2.7222 0.0001 25 1 2.3048 -4.5732 0.0104 26 1 4.7315 -4.1593 0.0042 27 1 6.5650 -1.6925 1.3132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307508671.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = -1.803480 kcal Electronic energy + Delta-G solvation = -13437.773919 eV Core-core repulsion = 11183.106596 eV Total energy + Delta-G solvation = -2254.667323 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98399 -37.02844 -35.20635 -31.77548 -30.95951 -29.37165 -26.64711 -23.67101 -23.17037 -20.65040 -19.35463 -18.52505 -17.76389 -17.13105 -16.09003 -15.76041 -15.53718 -14.98682 -14.62025 -14.35045 -13.59376 -13.46109 -13.33245 -13.19783 -13.13463 -12.46257 -12.29539 -12.03069 -11.89975 -11.73118 -11.36068 -11.02040 -10.87774 -10.07077 -9.22327 -9.11408 -8.89796 -8.25205 -6.47235 0.03512 0.51870 0.81968 1.27537 1.35500 1.44933 1.53980 1.71219 1.90597 2.02414 2.15895 2.85244 3.21670 4.22277 4.37845 4.55709 4.70975 4.84071 4.89585 4.95728 5.11076 5.17414 5.37733 5.39279 5.49268 5.67267 5.75679 5.98275 6.12340 6.26879 6.54727 6.61706 7.97105 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.008359 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.631092 B = 3348.820258 C = 4306.943626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.362 4.362 3 C 0.018 3.982 4 C -0.406 4.406 5 H 0.107 0.893 6 C 0.016 3.984 7 N -0.801 5.801 8 Si 1.010 2.990 9 H -0.260 1.260 10 H -0.262 1.262 11 H -0.250 1.250 12 S 0.130 5.870 13 C -0.256 4.256 14 C -0.010 4.010 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.134 4.134 18 C -0.064 4.064 19 S -0.144 6.144 20 H 0.036 0.964 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.310 0.690 24 H 0.128 0.872 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -3.176 0.652 3.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.369 4.369 3 C -0.101 4.101 4 C -0.439 4.439 5 H 0.124 0.876 6 C -0.203 4.203 7 N -0.427 5.427 8 Si 0.828 3.172 9 H -0.184 1.184 10 H -0.186 1.186 11 H -0.173 1.173 12 S 0.393 5.607 13 C -0.373 4.373 14 C -0.020 4.020 15 C -0.150 4.150 16 C -0.133 4.133 17 C -0.157 4.157 18 C -0.181 4.181 19 S 0.014 5.986 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.124 0.876 24 H 0.146 0.854 25 H 0.172 0.828 26 H 0.164 0.836 27 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.369 -2.015 0.432 2.474 hybrid contribution -2.078 -0.237 1.127 2.376 sum -0.709 -2.252 1.559 2.829 Atomic orbital electron populations 1.19785 0.90400 1.00164 0.99282 1.18789 0.96644 0.90120 1.31328 1.21807 0.95208 0.97039 0.96092 1.19670 0.96900 0.89041 1.38271 0.87551 1.27293 0.94604 1.06971 0.91412 1.68728 1.05473 1.36209 1.32267 0.84724 0.79536 0.73211 0.79743 1.18437 1.18568 1.17320 1.84918 1.06204 0.91110 1.78503 1.24064 0.97223 1.01606 1.14449 1.18231 0.91350 0.94519 0.97893 1.21058 1.00075 0.90622 1.03278 1.20784 0.92331 0.99507 1.00686 1.21384 0.96373 0.94220 1.03683 1.20509 0.92923 0.94733 1.09903 1.85413 1.04828 1.96521 1.11872 0.94474 0.93599 0.93033 0.87623 0.85415 0.82820 0.83571 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.55 9.62 71.23 0.69 -0.86 15 2 C -0.36 -17.94 5.95 -19.79 -0.12 -18.06 15 3 C 0.02 0.94 6.11 22.39 0.14 1.08 15 4 C -0.41 -20.04 8.84 23.16 0.20 -19.84 15 5 H 0.11 4.93 6.63 -2.91 -0.02 4.92 15 6 C 0.02 0.72 5.49 85.32 0.47 1.19 15 7 N -0.80 -37.95 10.63 21.87 0.23 -37.72 15 8 Si 1.01 33.83 29.57 68.60 2.03 35.86 15 9 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 10 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 11 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 12 S 0.13 6.69 19.79 -56.49 -1.12 5.57 15 13 C -0.26 -12.49 6.35 23.22 0.15 -12.34 15 14 C -0.01 -0.49 5.84 -21.48 -0.13 -0.62 15 15 C -0.13 -5.14 9.63 22.69 0.22 -4.92 15 16 C -0.11 -3.76 9.93 21.89 0.22 -3.55 15 17 C -0.13 -4.83 9.78 22.45 0.22 -4.61 15 18 C -0.06 -2.73 6.13 22.79 0.14 -2.59 15 19 S -0.14 -5.45 25.45 -56.49 -1.44 -6.89 15 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.05 1.85 6.84 -2.39 -0.02 1.83 15 22 H 0.05 1.90 7.33 -2.39 -0.02 1.88 15 23 H 0.31 13.06 8.29 -92.71 -0.77 12.29 15 24 H 0.13 4.38 7.39 -2.91 -0.02 4.36 15 25 H 0.15 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.15 4.30 8.06 -2.91 -0.02 4.27 15 27 H 0.07 2.67 9.07 73.35 0.67 3.33 15 Total: -1.00 -56.71 260.23 3.78 -52.93 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.88 Total: 15.37 kcal Atomic # 6 Polarization: -67.31 SS G_CDS: 2.19 Total: -65.11 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.23 Total: -37.72 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.56 Total: -1.32 kcal Total: -56.71 3.78 -52.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307508671.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.127 kcal (2) G-P(sol) polarization free energy of solvation -56.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds