Wall clock time and date at job start Mon Mar 30 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35097 * 119.43417 * 2 1 4 4 C 1.41182 * 120.48249 * 180.02562 * 3 2 1 5 5 C 1.40706 * 120.28393 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99912 * 154.08091 * 5 4 3 7 7 C 1.39763 * 119.99923 * 334.07639 * 5 4 3 8 8 N 1.31013 * 119.99924 * 342.99317 * 7 5 4 9 9 Si 1.86801 * 119.99772 * 162.99702 * 7 5 4 10 10 H 1.48495 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47186 * 120.00017 * 9 7 5 12 12 H 1.48505 * 109.47030 * 239.99735 * 9 7 5 13 13 C 1.41291 * 119.43140 * 359.97438 * 4 3 2 14 14 S 1.76205 * 120.12739 * 180.02562 * 13 4 3 15 15 C 1.40031 * 119.74703 * 0.02562 * 13 4 3 16 16 S 1.76053 * 130.41886 * 180.02562 * 15 13 4 17 17 C 1.75484 * 91.51662 * 179.97438 * 16 15 13 18 18 C 1.32452 * 110.74877 * 359.76050 * 17 16 15 19 19 C 1.39768 * 120.12576 * 359.97438 * 15 13 4 20 20 H 1.09003 * 109.47251 * 269.97932 * 1 2 3 21 21 H 1.08998 * 109.47238 * 29.97317 * 1 2 3 22 22 H 1.09002 * 109.47401 * 149.98297 * 1 2 3 23 23 H 1.08003 * 119.75855 * 0.02562 * 3 2 1 24 24 H 0.97001 * 119.99295 * 180.02562 * 8 7 5 25 25 H 1.40996 * 99.99854 * 269.97745 * 14 13 4 26 26 H 1.07996 * 124.62739 * 180.02562 * 17 16 15 27 27 H 1.08003 * 122.07112 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1709 1.1766 0.0000 4 6 3.5825 1.2024 -0.0005 5 6 4.2697 2.4302 -0.0011 6 1 5.2676 2.4907 0.4073 7 6 3.6608 3.5716 -0.5303 8 7 2.6172 3.4539 -1.3135 9 14 4.3352 5.2648 -0.1209 10 1 5.5096 5.1261 0.7773 11 1 4.7470 5.9496 -1.3726 12 1 3.2848 6.0650 0.5586 13 6 4.2991 -0.0152 -0.0005 14 16 6.0612 -0.0044 -0.0005 15 6 3.6038 -1.2307 -0.0005 16 16 4.2004 -2.8871 0.0001 17 6 2.5657 -3.5252 0.0003 18 6 1.6781 -2.5420 0.0052 19 6 2.2061 -1.2393 0.0000 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6177 2.1042 0.0004 24 1 2.1949 4.2460 -1.6810 25 1 6.3060 -0.0034 -1.3891 26 1 2.3172 -4.5762 0.0011 27 1 0.6145 -2.7296 0.0066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307510611.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:30 Heat of formation + Delta-G solvation = 11.538787 kcal Electronic energy + Delta-G solvation = -13572.114617 eV Core-core repulsion = 11318.025858 eV Total energy + Delta-G solvation = -2254.088759 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15181 -36.89340 -34.75711 -33.41077 -30.59101 -27.79946 -26.91224 -24.26769 -22.19907 -21.27796 -19.46062 -18.25807 -17.28568 -17.13528 -16.42017 -15.89148 -15.22750 -14.84257 -14.47557 -14.10113 -13.90778 -13.48086 -13.24603 -13.12374 -12.93160 -12.63544 -12.51439 -12.39865 -11.90237 -11.57325 -11.44521 -11.06144 -10.95156 -10.00434 -9.19440 -8.92783 -8.70443 -8.39183 -6.52500 0.21634 0.52788 0.93955 1.27898 1.34517 1.39430 1.44242 1.55258 1.79678 2.08075 2.15374 2.60727 3.47346 4.19939 4.39127 4.50736 4.61066 4.83887 4.91459 5.03200 5.03330 5.10940 5.26315 5.29884 5.49077 5.81468 5.83025 6.00641 6.10344 6.44034 6.66995 6.76758 8.06667 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.026327 B = 0.008938 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.274164 B = 3132.084465 C = 4103.290868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.037 4.037 3 C -0.160 4.160 4 C 0.132 3.868 5 C -0.442 4.442 6 H 0.099 0.901 7 C 0.038 3.962 8 N -0.795 5.795 9 Si 0.987 3.013 10 H -0.255 1.255 11 H -0.264 1.264 12 H -0.256 1.256 13 C -0.261 4.261 14 S -0.149 6.149 15 C -0.055 4.055 16 S 0.045 5.955 17 C -0.257 4.257 18 C -0.087 4.087 19 C -0.212 4.212 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.299 0.701 25 H 0.054 0.946 26 H 0.186 0.814 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -3.105 1.323 4.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 C -0.181 4.181 4 C 0.124 3.876 5 C -0.469 4.469 6 H 0.117 0.883 7 C -0.182 4.182 8 N -0.418 5.418 9 Si 0.807 3.193 10 H -0.178 1.178 11 H -0.189 1.189 12 H -0.180 1.180 13 C -0.382 4.382 14 S 0.009 5.991 15 C -0.173 4.173 16 S 0.306 5.694 17 C -0.390 4.390 18 C -0.116 4.116 19 C -0.220 4.220 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.019 0.981 26 H 0.203 0.797 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.892 -3.729 1.392 4.079 hybrid contribution -1.871 1.385 -1.037 2.549 sum -2.764 -2.344 0.355 3.641 Atomic orbital electron populations 1.20752 0.89811 1.02703 1.02564 1.19776 0.96610 0.91090 0.96451 1.20874 0.94013 0.97116 1.06118 1.18026 0.92532 0.91750 0.85285 1.20207 1.02900 0.92401 1.31384 0.88271 1.26990 0.93921 1.05618 0.91684 1.69923 1.17450 1.34672 1.19732 0.85054 0.79818 0.74916 0.79545 1.17807 1.18859 1.18049 1.20237 0.92754 0.93127 1.32110 1.85613 1.04720 1.98203 1.10610 1.22824 0.96786 0.96209 1.01506 1.83694 1.09243 0.96412 1.80046 1.25130 0.94500 1.03474 1.15894 1.19964 1.01069 0.89984 1.00576 1.18106 0.91276 0.94418 1.18203 0.90371 0.91838 0.90595 0.86158 0.88970 0.98074 0.79698 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.38 9.77 71.24 0.70 -2.68 15 2 C -0.04 -1.62 5.90 -19.58 -0.12 -1.74 15 3 C -0.16 -7.91 8.15 22.27 0.18 -7.73 15 4 C 0.13 6.96 5.57 -21.20 -0.12 6.84 15 5 C -0.44 -22.40 8.42 23.24 0.20 -22.21 15 6 H 0.10 5.00 7.01 -2.91 -0.02 4.98 15 7 C 0.04 1.72 5.14 85.18 0.44 2.16 15 8 N -0.79 -37.42 10.99 21.80 0.24 -37.18 15 9 Si 0.99 34.83 29.59 68.60 2.03 36.86 15 10 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 11 H -0.26 -8.96 7.11 99.48 0.71 -8.26 15 12 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 13 C -0.26 -13.36 6.22 23.46 0.15 -13.22 15 14 S -0.15 -6.87 24.00 -56.49 -1.36 -8.22 15 15 C -0.05 -2.60 6.34 23.07 0.15 -2.46 15 16 S 0.05 1.77 22.95 -56.49 -1.30 0.47 15 17 C -0.26 -8.61 11.10 66.70 0.74 -7.87 15 18 C -0.09 -3.11 9.55 21.72 0.21 -2.91 15 19 C -0.21 -9.37 5.84 -21.33 -0.12 -9.49 15 20 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.06 2.06 8.06 -2.39 -0.02 2.04 15 22 H 0.08 2.19 7.10 -2.39 -0.02 2.18 15 23 H 0.12 5.95 6.21 -2.91 -0.02 5.93 15 24 H 0.30 12.43 8.30 -92.71 -0.77 11.66 15 25 H 0.05 2.47 9.55 73.80 0.70 3.18 15 26 H 0.19 4.69 8.06 -2.91 -0.02 4.67 15 27 H 0.15 4.42 7.33 -2.91 -0.02 4.39 15 Total: -1.00 -56.36 260.59 3.93 -52.43 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.92 Total: 16.94 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 2.39 Total: -61.30 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.24 Total: -37.18 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -2.65 Total: -7.75 kcal Total: -56.36 3.93 -52.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307510611.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.973 kcal (2) G-P(sol) polarization free energy of solvation -56.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds