Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37268 * 119.77815 * 2 1 4 4 C 1.39341 * 120.18398 * 179.97438 * 3 2 1 5 5 S 1.76197 * 119.99646 * 180.02562 * 4 3 2 6 6 C 1.38440 * 120.01209 * 0.04403 * 4 3 2 7 7 C 1.39656 * 120.30395 * 359.97438 * 6 4 3 8 8 S 1.75798 * 130.12888 * 179.69780 * 7 6 4 9 9 C 1.69974 * 93.23559 * 179.97438 * 8 7 6 10 10 C 1.36476 * 111.96739 * 0.34174 * 9 8 7 11 11 C 1.40812 * 123.29178 * 179.72548 * 10 9 8 12 12 H 1.08000 * 119.99099 * 211.35569 * 11 10 9 13 13 C 1.39664 * 120.00205 * 31.34704 * 11 10 9 14 14 N 1.31096 * 119.99988 * 9.95985 * 13 11 10 15 15 Si 1.86803 * 119.99863 * 189.95531 * 13 11 10 16 16 H 1.48492 * 109.46999 * 60.00086 * 15 13 11 17 17 H 1.48496 * 109.46732 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46788 * 300.00117 * 15 13 11 19 19 C 1.39447 * 119.69040 * 359.97438 * 7 6 4 20 20 H 1.09002 * 109.47196 * 96.75233 * 1 2 3 21 21 H 1.09002 * 109.46638 * 216.75064 * 1 2 3 22 22 H 1.09000 * 109.46567 * 336.74729 * 1 2 3 23 23 H 1.08001 * 119.91209 * 0.02562 * 3 2 1 24 24 H 1.34500 * 102.99794 * 270.01956 * 5 4 3 25 25 H 1.07995 * 119.84712 * 179.97438 * 6 4 3 26 26 H 1.08001 * 124.01845 * 180.08785 * 9 8 7 27 27 H 0.97000 * 120.00380 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.1914 0.0000 4 6 3.5822 1.2013 0.0005 5 16 4.4522 2.7335 0.0012 6 6 4.2831 0.0075 0.0002 7 6 3.6001 -1.2107 -0.0002 8 16 4.2184 -2.8563 -0.0079 9 6 2.6636 -3.5431 -0.0019 10 6 1.6852 -2.5915 -0.0020 11 6 0.3105 -2.8964 -0.0032 12 1 -0.3891 -2.2331 -0.4899 13 6 -0.1481 -4.0565 0.6249 14 7 0.6631 -4.7581 1.3788 15 14 -1.9173 -4.6084 0.3906 16 1 -2.1716 -4.8565 -1.0512 17 1 -2.1515 -5.8583 1.1574 18 1 -2.8352 -3.5486 0.8800 19 6 2.2057 -1.2207 0.0003 20 1 -0.3634 -0.1208 -1.0206 21 1 -0.3633 -0.8235 0.6149 22 1 -0.3632 0.9442 0.4057 23 1 1.6438 2.1238 0.0004 24 1 4.6017 2.9970 -1.3092 25 1 5.3630 0.0182 0.0002 26 1 2.4725 -4.6060 -0.0025 27 1 0.3445 -5.5637 1.8153 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307565802.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = 26.817575 kcal Electronic energy + Delta-G solvation = -13515.991367 eV Core-core repulsion = 11262.565146 eV Total energy + Delta-G solvation = -2253.426221 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85021 -35.00928 -32.38890 -32.15864 -28.51837 -26.85774 -25.29810 -22.67684 -21.13956 -19.73101 -17.54303 -16.83240 -16.27368 -15.23887 -14.84341 -14.41432 -14.24260 -13.38911 -12.91710 -12.58913 -12.18698 -11.97819 -11.84225 -11.47844 -11.22767 -11.20787 -10.88086 -10.64788 -10.36577 -10.05040 -9.68676 -9.45014 -9.16321 -8.41692 -7.95484 -7.52587 -6.76812 -6.66431 -4.36877 1.32801 1.88621 2.01449 2.71077 2.93339 3.06280 3.06363 3.08932 3.62013 3.68165 3.95440 4.35045 5.14639 5.38342 5.55734 5.86873 5.93266 5.99507 6.28777 6.33953 6.43849 6.72004 6.77312 6.89963 7.14252 7.15889 7.39236 7.62050 7.84795 8.38119 8.70807 8.82848 10.28193 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.007405 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.012345 B = 3780.492517 C = 4600.072082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.043 4.043 3 C -0.106 4.106 4 C -0.110 4.110 5 S -0.142 6.142 6 C -0.047 4.047 7 C -0.152 4.152 8 S 0.049 5.951 9 C -0.332 4.332 10 C 0.082 3.918 11 C -0.447 4.447 12 H 0.085 0.915 13 C 0.071 3.929 14 N -0.805 5.805 15 Si 0.909 3.091 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.037 4.037 20 H 0.065 0.935 21 H 0.097 0.903 22 H 0.051 0.949 23 H 0.124 0.876 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.154 0.846 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 6.679 -2.124 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.225 4.225 5 S 0.015 5.985 6 C -0.073 4.073 7 C -0.269 4.269 8 S 0.313 5.687 9 C -0.468 4.468 10 C 0.073 3.927 11 C -0.480 4.480 12 H 0.103 0.897 13 C -0.145 4.145 14 N -0.432 5.432 15 Si 0.733 3.267 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.048 4.048 20 H 0.083 0.917 21 H 0.116 0.884 22 H 0.070 0.930 23 H 0.142 0.858 24 H 0.029 0.971 25 H 0.141 0.859 26 H 0.171 0.829 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.526 6.514 -1.750 7.611 hybrid contribution -2.606 -0.633 -0.964 2.850 sum 0.920 5.881 -2.714 6.541 Atomic orbital electron populations 1.21062 0.91104 1.02805 1.02601 1.19651 0.96005 0.90769 0.98246 1.20927 0.92276 0.97347 1.02553 1.20623 0.95358 0.93472 1.13008 1.85679 1.75429 1.26179 1.11169 1.20724 0.98686 0.89383 0.98480 1.22664 0.97219 0.97781 1.09266 1.81939 1.11949 0.94265 1.80578 1.24264 0.92283 1.03103 1.27173 1.17301 0.94553 0.86125 0.94707 1.19051 0.91709 1.05920 1.31368 0.89687 1.25762 0.99591 0.95818 0.93316 1.69874 1.36878 1.13918 1.22510 0.86355 0.82319 0.78608 0.79373 1.19035 1.20473 1.19044 1.19859 0.91484 0.94935 0.98480 0.91676 0.88444 0.93010 0.85794 0.97068 0.85924 0.82871 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.51 36.01 0.31 -1.83 15 2 C -0.04 -0.87 5.92 -104.06 -0.62 -1.49 15 3 C -0.11 -1.92 9.37 -39.52 -0.37 -2.29 15 4 C -0.11 -1.97 6.11 -39.10 -0.24 -2.21 15 5 S -0.14 -2.11 25.77 -107.50 -2.77 -4.88 15 6 C -0.05 -0.89 9.81 -38.98 -0.38 -1.27 15 7 C -0.15 -3.32 6.43 -38.60 -0.25 -3.57 15 8 S 0.05 1.05 22.96 -107.50 -2.47 -1.41 15 9 C -0.33 -8.39 9.45 30.10 0.28 -8.11 15 10 C 0.08 2.09 5.58 -106.18 -0.59 1.49 15 11 C -0.45 -11.19 7.37 -38.08 -0.28 -11.47 15 12 H 0.09 1.98 5.61 -52.49 -0.29 1.69 15 13 C 0.07 1.74 5.34 -17.33 -0.09 1.65 15 14 N -0.80 -20.70 11.29 55.54 0.63 -20.07 15 15 Si 0.91 18.36 29.57 -169.99 -5.03 13.34 15 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 17 H -0.28 -5.61 7.11 56.52 0.40 -5.20 15 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 19 C -0.04 -0.85 5.99 -105.15 -0.63 -1.48 15 20 H 0.06 1.10 7.98 -51.93 -0.41 0.69 15 21 H 0.10 1.94 5.70 -51.93 -0.30 1.64 15 22 H 0.05 0.77 8.02 -51.93 -0.42 0.36 15 23 H 0.12 1.92 8.04 -52.49 -0.42 1.49 15 24 H 0.07 0.89 9.07 97.61 0.89 1.78 15 25 H 0.12 2.06 8.06 -52.49 -0.42 1.64 15 26 H 0.15 4.08 6.87 -52.49 -0.36 3.72 15 27 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 LS Contribution 258.42 15.07 3.89 3.89 Total: -1.00 -25.93 258.42 -9.48 -35.41 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -0.87 Total: 4.31 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -2.86 Total: -30.59 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.63 Total: -20.07 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -5.24 Total: -6.29 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.93 -9.48 -35.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307565802.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.229 kcal (2) G-P(sol) polarization free energy of solvation -25.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds