Wall clock time and date at job start Mon Mar 30 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37557 * 119.72574 * 2 1 4 4 C 1.39607 * 120.17546 * 180.02562 * 3 2 1 5 5 S 1.76199 * 119.83736 * 179.97438 * 4 3 2 6 6 C 1.37580 * 120.32851 * 359.96930 * 4 3 2 7 7 C 1.41882 * 120.30030 * 0.02562 * 6 4 3 8 8 C 1.39802 * 128.41857 * 180.02562 * 7 6 4 9 9 C 1.36943 * 115.02839 * 180.02562 * 8 7 6 10 10 C 1.39908 * 124.82223 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00548 * 353.27013 * 10 9 8 12 12 C 1.40184 * 120.00157 * 173.27191 * 10 9 8 13 13 N 1.30766 * 119.99594 * 6.57011 * 12 10 9 14 14 Si 1.86797 * 120.00461 * 186.57339 * 12 10 9 15 15 H 1.48502 * 109.47142 * 94.98484 * 14 12 10 16 16 H 1.48499 * 109.47317 * 214.98378 * 14 12 10 17 17 H 1.48498 * 109.47112 * 334.98571 * 14 12 10 18 18 S 1.75444 * 110.35110 * 359.97438 * 9 8 7 19 19 C 1.39634 * 119.72393 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47038 * 90.00153 * 1 2 3 21 21 H 1.08996 * 109.47438 * 210.00368 * 1 2 3 22 22 H 1.09002 * 109.46703 * 330.00437 * 1 2 3 23 23 H 1.08000 * 119.91249 * 0.27190 * 3 2 1 24 24 H 1.34493 * 103.00413 * 89.99394 * 5 4 3 25 25 H 1.07999 * 119.84779 * 180.02562 * 6 4 3 26 26 H 1.08003 * 122.48654 * 359.97438 * 8 7 6 27 27 H 0.96998 * 119.99912 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1946 0.0000 4 6 3.5851 1.2055 -0.0005 5 16 4.4498 2.7408 -0.0012 6 6 4.2892 0.0235 -0.0004 7 6 3.6030 -1.2184 -0.0003 8 6 4.1416 -2.5085 0.0003 9 6 3.2198 -3.5212 -0.0003 10 6 3.5313 -4.8851 -0.0004 11 1 4.5571 -5.2048 -0.1096 12 6 2.5119 -5.8370 0.1412 13 7 1.2602 -5.4588 0.1442 14 14 2.9416 -7.6455 0.3256 15 1 2.9867 -7.9990 1.7672 16 1 1.9115 -8.4709 -0.3545 17 1 4.2684 -7.9042 -0.2892 18 16 1.5926 -2.8651 -0.0010 19 6 2.1994 -1.2126 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.6432 2.1264 0.0044 24 1 4.5987 3.0048 1.3091 25 1 5.3690 0.0410 -0.0004 26 1 5.2058 -2.6928 0.0003 27 1 0.5548 -6.1173 0.2425 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307574563.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:51 Heat of formation + Delta-G solvation = 7.260955 kcal Electronic energy + Delta-G solvation = -13221.876945 eV Core-core repulsion = 10967.602685 eV Total energy + Delta-G solvation = -2254.274260 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.34052 -35.16793 -33.40018 -31.71125 -29.14930 -26.23293 -25.53096 -22.54132 -20.95059 -19.19483 -17.88843 -17.07076 -16.11011 -15.46244 -14.71790 -14.21890 -13.93794 -13.30960 -12.95532 -12.46661 -12.36349 -12.06351 -11.71041 -11.70426 -11.48188 -11.47141 -10.90419 -10.59601 -10.27701 -10.17554 -9.94282 -9.34569 -9.12411 -8.36508 -7.76704 -7.51205 -7.27532 -6.48709 -4.77621 1.73911 1.95126 2.34781 2.74303 2.80338 2.86642 3.13752 3.26991 3.49529 3.51780 3.74790 4.48058 4.93800 5.56291 5.75118 5.95965 6.12044 6.19427 6.29489 6.48948 6.58800 6.62645 6.95164 7.08815 7.18798 7.30081 7.40309 7.61223 7.79069 7.92816 8.20137 8.32325 9.56772 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.041714 B = 0.006135 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.082425 B = 4562.619051 C = 5208.079286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.028 4.028 3 C -0.157 4.157 4 C -0.087 4.087 5 S -0.158 6.158 6 C -0.102 4.102 7 C 0.014 3.986 8 C -0.361 4.361 9 C 0.053 3.947 10 C -0.383 4.383 11 H 0.100 0.900 12 C 0.053 3.947 13 N -0.776 5.776 14 Si 0.939 3.061 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.256 1.256 18 S 0.149 5.851 19 C -0.245 4.245 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 2.555 0.519 2.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.034 4.034 3 C -0.180 4.180 4 C -0.202 4.202 5 S -0.001 6.001 6 C -0.125 4.125 7 C 0.004 3.996 8 C -0.386 4.386 9 C -0.067 4.067 10 C -0.417 4.417 11 H 0.118 0.882 12 C -0.168 4.168 13 N -0.401 5.401 14 Si 0.762 3.238 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.179 1.179 18 S 0.411 5.589 19 C -0.360 4.360 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.027 0.973 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.478 2.609 0.303 3.611 hybrid contribution 1.246 -0.832 1.161 1.896 sum -1.232 1.777 1.465 2.612 Atomic orbital electron populations 1.20750 0.92235 1.01909 1.01794 1.18983 0.94429 0.90923 0.99080 1.20596 0.92125 0.96450 1.08857 1.20412 0.95226 0.93026 1.11504 1.85555 1.76145 1.27254 1.11110 1.21175 0.98296 0.90347 1.02667 1.17990 0.91750 0.93047 0.96862 1.19596 0.98194 0.89569 1.31256 1.21468 0.94365 0.96455 0.94392 1.19355 0.95996 0.88929 1.37417 0.88185 1.26339 0.94104 1.03950 0.92424 1.68652 1.00869 1.38164 1.32463 0.85731 0.80001 0.78321 0.79762 1.18807 1.19505 1.17910 1.84794 1.07264 0.89194 1.77690 1.23710 0.97411 1.00905 1.13963 0.91595 0.91770 0.92234 0.86808 0.97264 0.86879 0.87355 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.86 36.01 0.35 -1.50 15 2 C -0.03 -0.58 5.90 -104.35 -0.62 -1.19 15 3 C -0.16 -3.10 9.41 -39.32 -0.37 -3.47 15 4 C -0.09 -1.77 6.08 -39.31 -0.24 -2.01 15 5 S -0.16 -2.68 25.75 -107.50 -2.77 -5.45 15 6 C -0.10 -2.23 9.80 -38.43 -0.38 -2.61 15 7 C 0.01 0.33 5.85 -107.12 -0.63 -0.29 15 8 C -0.36 -9.03 10.14 -39.47 -0.40 -9.43 15 9 C 0.05 1.34 6.10 -39.43 -0.24 1.09 15 10 C -0.38 -9.24 9.26 -38.23 -0.35 -9.59 15 11 H 0.10 2.28 7.86 -52.48 -0.41 1.87 15 12 C 0.05 1.18 5.49 -17.27 -0.09 1.09 15 13 N -0.78 -17.55 10.62 55.56 0.59 -16.95 15 14 Si 0.94 16.45 29.57 -169.99 -5.03 11.43 15 15 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 16 H -0.27 -4.60 7.11 56.52 0.40 -4.20 15 17 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 18 S 0.15 3.56 19.41 -107.50 -2.09 1.47 15 19 C -0.24 -5.75 6.30 -38.26 -0.24 -5.99 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.06 1.10 7.55 -51.93 -0.39 0.71 15 22 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 23 H 0.11 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.06 1.00 9.07 97.61 0.89 1.89 15 25 H 0.11 2.28 8.06 -52.49 -0.42 1.86 15 26 H 0.11 2.59 8.06 -52.48 -0.42 2.16 15 27 H 0.30 6.08 8.29 -40.82 -0.34 5.74 15 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -25.35 264.04 -9.68 -35.03 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -1.16 Total: 4.41 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -3.20 Total: -33.91 kcal Atomic # 7 Polarization: -17.55 SS G_CDS: 0.59 Total: -16.95 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.43 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -4.86 Total: -3.98 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.35 -9.68 -35.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574563.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.294 kcal (2) G-P(sol) polarization free energy of solvation -25.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds