Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32623 * 122.10463 * 2 1 4 4 S 1.75529 * 110.61499 * 180.02562 * 3 2 1 5 5 C 1.76037 * 91.48817 * 0.02562 * 4 3 2 6 6 C 1.39329 * 109.37591 * 359.97438 * 5 4 3 7 7 C 1.47987 * 118.03029 * 179.97438 * 6 5 4 8 8 C 1.40412 * 120.30656 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99671 * 326.99524 * 8 7 6 10 10 C 1.39830 * 119.99980 * 147.00280 * 8 7 6 11 11 N 1.30967 * 119.99751 * 350.30275 * 10 8 7 12 12 Si 1.86797 * 119.99773 * 170.29772 * 10 8 7 13 13 H 1.48494 * 109.47655 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46838 * 120.00103 * 12 10 8 15 15 H 1.48501 * 109.47281 * 239.99679 * 12 10 8 16 16 C 1.40463 * 119.38264 * 359.97438 * 7 6 5 17 17 C 1.36296 * 120.37697 * 359.97438 * 16 7 6 18 18 C 1.39170 * 121.08578 * 0.04508 * 17 16 7 19 19 S 1.76199 * 119.40562 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.47331 * 263.83765 * 1 2 3 21 21 H 1.09000 * 109.47619 * 23.83847 * 1 2 3 22 22 H 1.09003 * 109.47352 * 143.84506 * 1 2 3 23 23 H 1.08003 * 124.69612 * 0.04397 * 3 2 1 24 24 H 0.97002 * 119.99828 * 180.02562 * 11 10 8 25 25 H 1.07998 * 119.81609 * 180.02562 * 16 7 6 26 26 H 1.07999 * 119.45487 * 180.02562 * 17 16 7 27 27 H 1.41000 * 100.00024 * 269.97553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2118 1.1234 0.0000 4 16 3.9319 0.7738 -0.0007 5 6 3.6262 -0.9598 -0.0018 6 6 2.2515 -1.1868 -0.0010 7 6 1.7781 -2.5889 -0.0023 8 6 0.4030 -2.8724 -0.0010 9 1 -0.2836 -2.2139 0.5102 10 6 -0.0775 -4.0075 -0.6614 11 7 0.7189 -4.7001 -1.4368 12 14 -1.8551 -4.5358 -0.4375 13 1 -2.5402 -3.5919 0.4817 14 1 -2.5425 -4.5307 -1.7539 15 1 -1.8962 -5.9046 0.1369 16 6 2.7173 -3.6334 -0.0048 17 6 4.0525 -3.3597 -0.0066 18 6 4.5171 -2.0478 -0.0051 19 16 6.2528 -1.7447 -0.0068 20 1 -0.3634 -0.1103 1.0217 21 1 -0.3634 0.9400 -0.4153 22 1 -0.3634 -0.8298 -0.6063 23 1 1.7864 2.1161 0.0007 24 1 0.3855 -5.4872 -1.8952 25 1 2.3796 -4.6592 -0.0062 26 1 4.7616 -4.1742 -0.0090 27 1 6.4957 -1.7043 1.3815 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307576277.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = 17.071536 kcal Electronic energy + Delta-G solvation = -13644.716651 eV Core-core repulsion = 11390.867810 eV Total energy + Delta-G solvation = -2253.848841 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02255 -36.63200 -35.68000 -31.93717 -30.59741 -28.71822 -27.03037 -23.59634 -23.12319 -20.30611 -19.82903 -18.36110 -17.48780 -16.73760 -16.14415 -16.03807 -15.55310 -14.92110 -14.61458 -14.18429 -13.73523 -13.49172 -13.19578 -13.06775 -12.88431 -12.73250 -12.42855 -12.03108 -11.84100 -11.61581 -11.36763 -11.24267 -11.01498 -9.82577 -9.16922 -8.99122 -8.83643 -8.47311 -6.49535 0.16833 0.47055 0.91450 1.16755 1.39926 1.40701 1.49352 1.57128 1.74704 1.97237 2.13794 2.57800 3.44965 4.20862 4.34783 4.50957 4.70132 4.82217 4.95122 4.97510 5.02687 5.14346 5.29167 5.33953 5.58817 5.81367 5.89401 5.92147 6.04793 6.44864 6.61951 6.73376 8.08651 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.008921 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.887554 B = 3137.890157 C = 4155.463427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.053 4.053 3 C -0.274 4.274 4 S 0.056 5.944 5 C -0.063 4.063 6 C -0.207 4.207 7 C 0.142 3.858 8 C -0.434 4.434 9 H 0.111 0.889 10 C 0.032 3.968 11 N -0.794 5.794 12 Si 0.990 3.010 13 H -0.246 1.246 14 H -0.264 1.264 15 H -0.264 1.264 16 C -0.214 4.214 17 C -0.022 4.022 18 C -0.244 4.244 19 S -0.160 6.160 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.181 0.819 24 H 0.299 0.701 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 3.348 1.983 4.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.064 4.064 3 C -0.407 4.407 4 S 0.319 5.681 5 C -0.182 4.182 6 C -0.216 4.216 7 C 0.137 3.863 8 C -0.460 4.460 9 H 0.129 0.871 10 C -0.188 4.188 11 N -0.416 5.416 12 Si 0.810 3.190 13 H -0.169 1.169 14 H -0.189 1.189 15 H -0.188 1.188 16 C -0.237 4.237 17 C -0.045 4.045 18 C -0.364 4.364 19 S -0.003 6.003 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.198 0.802 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.562 4.295 1.576 4.609 hybrid contribution -2.307 -1.547 0.782 2.885 sum -2.869 2.748 2.357 4.619 Atomic orbital electron populations 1.20815 0.89125 1.03162 1.02504 1.18779 0.98039 0.90700 0.98914 1.24933 0.95275 1.01964 1.18574 1.83446 1.06835 0.97722 1.80067 1.22835 0.96509 0.96579 1.02248 1.19442 0.91299 0.94556 1.16312 1.18955 0.94284 0.88411 0.84692 1.20278 0.93175 1.06731 1.25835 0.87148 1.27064 1.05441 0.94140 0.92176 1.69919 1.39724 1.13845 1.18099 0.84998 0.74952 0.79348 0.79750 1.16898 1.18863 1.18812 1.20729 0.91896 0.98879 1.12223 1.20768 0.95850 0.94079 0.93831 1.19661 0.92219 0.93653 1.30890 1.86063 1.06719 1.95757 1.11771 0.90997 0.90442 0.90688 0.80220 0.88981 0.86818 0.86316 0.96376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.35 8.54 71.24 0.61 -2.74 15 2 C -0.05 -2.20 5.81 -20.57 -0.12 -2.32 15 3 C -0.27 -10.24 10.81 66.66 0.72 -9.52 15 4 S 0.06 2.24 22.93 -56.49 -1.30 0.94 15 5 C -0.06 -3.01 6.35 23.11 0.15 -2.86 15 6 C -0.21 -10.05 6.01 -19.98 -0.12 -10.17 15 7 C 0.14 7.15 5.68 -19.62 -0.11 7.04 15 8 C -0.43 -20.09 7.23 23.19 0.17 -19.92 15 9 H 0.11 4.71 5.50 -2.91 -0.02 4.69 15 10 C 0.03 1.37 5.24 85.21 0.45 1.82 15 11 N -0.79 -36.68 11.07 21.81 0.24 -36.44 15 12 Si 0.99 32.18 29.57 68.60 2.03 34.21 15 13 H -0.25 -7.59 7.11 99.48 0.71 -6.89 15 14 H -0.26 -8.35 7.11 99.48 0.71 -7.65 15 15 H -0.26 -8.36 7.11 99.48 0.71 -7.66 15 16 C -0.21 -10.71 8.53 22.36 0.19 -10.52 15 17 C -0.02 -1.05 9.63 22.04 0.21 -0.84 15 18 C -0.24 -11.48 6.16 23.08 0.14 -11.33 15 19 S -0.16 -6.41 25.44 -56.49 -1.44 -7.84 15 20 H 0.07 2.30 7.98 -2.39 -0.02 2.28 15 21 H 0.08 2.17 8.08 -2.39 -0.02 2.15 15 22 H 0.07 2.80 5.74 -2.39 -0.01 2.79 15 23 H 0.18 5.35 8.06 -2.91 -0.02 5.32 15 24 H 0.30 12.30 8.30 -92.71 -0.77 11.53 15 25 H 0.11 5.74 6.48 -2.91 -0.02 5.72 15 26 H 0.12 5.03 8.06 -2.91 -0.02 5.01 15 27 H 0.07 2.66 9.55 73.80 0.70 3.37 15 Total: -1.00 -53.59 258.06 3.74 -49.84 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.92 Total: 20.66 kcal Atomic # 6 Polarization: -63.66 SS G_CDS: 2.28 Total: -61.37 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.24 Total: -36.44 kcal Atomic # 14 Polarization: 32.18 SS G_CDS: 2.03 Total: 34.21 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.73 Total: -6.90 kcal Total: -53.59 3.74 -49.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576277.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.916 kcal (2) G-P(sol) polarization free energy of solvation -53.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds