Wall clock time and date at job start Mon Mar 30 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36325 * 119.45739 * 2 1 4 4 C 1.40430 * 120.37855 * 179.97438 * 3 2 1 5 5 C 1.40418 * 120.30798 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99943 * 154.69807 * 5 4 3 7 7 C 1.39824 * 120.00116 * 334.69778 * 5 4 3 8 8 N 1.30970 * 119.99987 * 342.16685 * 7 5 4 9 9 Si 1.86795 * 120.00232 * 162.16282 * 7 5 4 10 10 H 1.48503 * 109.47327 * 94.63774 * 9 7 5 11 11 H 1.48504 * 109.47665 * 214.63883 * 9 7 5 12 12 H 1.48500 * 109.47016 * 334.63890 * 9 7 5 13 13 C 1.48011 * 119.38397 * 0.04209 * 4 3 2 14 14 C 1.40100 * 129.23390 * 180.02562 * 13 4 3 15 15 C 1.32629 * 115.79191 * 180.02562 * 14 13 4 16 16 S 1.75524 * 110.60524 * 359.97438 * 15 14 13 17 17 C 1.39282 * 118.02962 * 359.97438 * 13 4 3 18 18 C 1.39138 * 119.45926 * 180.02562 * 2 1 3 19 19 S 1.76198 * 119.40486 * 0.27692 * 18 2 1 20 20 H 1.08999 * 109.47247 * 269.95866 * 1 2 3 21 21 H 1.08998 * 109.47135 * 29.95948 * 1 2 3 22 22 H 1.09000 * 109.47013 * 149.96478 * 1 2 3 23 23 H 1.07994 * 119.80858 * 359.97438 * 3 2 1 24 24 H 0.97001 * 120.00192 * 179.97438 * 8 7 5 25 25 H 1.08009 * 122.10518 * 0.02562 * 14 13 4 26 26 H 1.07997 * 124.69661 * 180.02562 * 15 14 13 27 27 H 1.41000 * 100.00039 * 269.72675 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1774 1.1870 0.0000 4 6 3.5815 1.2096 0.0005 5 6 4.2705 2.4331 0.0011 6 1 5.2722 2.4886 0.4012 7 6 3.6599 3.5796 -0.5164 8 7 2.6194 3.4686 -1.3040 9 14 4.3282 5.2696 -0.0844 10 1 5.2699 5.7149 -1.1428 11 1 3.2046 6.2353 0.0166 12 1 5.0413 5.2022 1.2164 13 6 4.3284 -0.0683 0.0002 14 6 5.7124 -0.2857 0.0011 15 6 6.0972 -1.5550 -0.0001 16 16 4.7040 -2.6227 -0.0018 17 6 3.5972 -1.2537 -0.0002 18 6 2.1913 -1.2115 -0.0005 19 16 1.2802 -2.7196 -0.0086 20 1 -0.3634 -0.0007 1.0276 21 1 -0.3633 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5144 23 1 1.6255 2.1153 -0.0004 24 1 2.1956 4.2639 -1.6627 25 1 6.4215 0.5290 0.0026 26 1 7.1252 -1.8857 0.0007 27 1 1.1534 -2.9366 1.3788 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307579035.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:55 Heat of formation + Delta-G solvation = 25.055394 kcal Electronic energy + Delta-G solvation = -13557.175688 eV Core-core repulsion = 11303.673054 eV Total energy + Delta-G solvation = -2253.502635 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.19252 -34.82860 -34.21112 -30.37375 -29.58287 -26.06669 -25.15562 -22.34091 -21.01143 -19.16057 -17.67950 -16.95492 -15.88604 -15.17394 -14.68355 -14.24969 -13.59755 -13.18688 -12.92097 -12.78718 -12.14443 -11.88407 -11.69829 -11.46358 -11.29998 -11.16457 -10.88875 -10.61974 -10.33231 -9.88394 -9.81987 -9.56926 -9.27097 -8.27816 -7.39916 -7.22201 -7.17933 -6.87220 -4.74663 1.87757 2.20275 2.59969 2.74644 2.82754 2.87987 2.96787 3.09359 3.48572 3.57361 3.68038 4.19222 5.24452 5.82142 5.97847 6.15849 6.30805 6.36643 6.44327 6.59799 6.68684 6.84534 6.92097 7.05718 7.19792 7.49293 7.59166 7.71458 7.82074 8.17398 8.35306 8.51465 9.61147 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.008908 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.201507 B = 3142.607273 C = 4224.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.015 3.985 3 C -0.201 4.201 4 C 0.167 3.833 5 C -0.409 4.409 6 H 0.091 0.909 7 C 0.070 3.930 8 N -0.749 5.749 9 Si 0.919 3.081 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.255 1.255 13 C -0.198 4.198 14 C -0.059 4.059 15 C -0.285 4.285 16 S 0.033 5.967 17 C -0.025 4.025 18 C -0.228 4.228 19 S -0.174 6.174 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.126 0.874 24 H 0.292 0.708 25 H 0.124 0.876 26 H 0.146 0.854 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -0.712 1.729 1.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.010 3.990 3 C -0.224 4.224 4 C 0.162 3.838 5 C -0.435 4.435 6 H 0.109 0.891 7 C -0.155 4.155 8 N -0.370 5.370 9 Si 0.742 3.258 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.178 1.178 13 C -0.207 4.207 14 C -0.089 4.089 15 C -0.418 4.418 16 S 0.294 5.706 17 C -0.143 4.143 18 C -0.348 4.348 19 S -0.016 6.016 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.143 0.857 24 H 0.104 0.896 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -0.365 -2.962 1.326 3.266 hybrid contribution 1.004 3.037 0.994 3.350 sum 0.640 0.075 2.320 2.408 Atomic orbital electron populations 1.20924 0.92683 1.02589 1.01102 1.19251 0.94431 0.91930 0.93389 1.20573 0.93520 0.96186 1.12112 1.18564 0.91593 0.89533 0.84148 1.19768 1.01741 0.92047 1.29902 0.89065 1.26209 0.94090 1.02613 0.92561 1.69900 1.15748 1.33357 1.17948 0.86082 0.79793 0.79281 0.80658 1.18865 1.19373 1.17797 1.19068 0.91688 0.92854 1.17042 1.19671 0.94911 0.95832 0.98464 1.24636 1.00823 0.96436 1.19900 1.83656 0.96630 1.09848 1.80437 1.22417 0.95779 0.94910 1.01205 1.19220 0.90773 0.92531 1.32268 1.86146 1.73866 1.30670 1.10961 0.92683 0.92242 0.90553 0.85671 0.89628 0.85827 0.83657 0.97773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 9.51 36.00 0.34 -1.85 15 2 C 0.02 0.35 5.84 -104.98 -0.61 -0.26 15 3 C -0.20 -4.90 8.19 -39.45 -0.32 -5.23 15 4 C 0.17 4.19 5.75 -104.25 -0.60 3.59 15 5 C -0.41 -9.65 8.80 -38.17 -0.34 -9.99 15 6 H 0.09 2.03 7.52 -52.49 -0.39 1.64 15 7 C 0.07 1.53 5.12 -17.33 -0.09 1.44 15 8 N -0.75 -17.02 11.00 55.54 0.61 -16.41 15 9 Si 0.92 16.18 29.59 -169.99 -5.03 11.15 15 10 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 11 H -0.27 -4.63 7.11 56.52 0.40 -4.22 15 12 H -0.25 -4.47 7.11 56.52 0.40 -4.07 15 13 C -0.20 -4.84 6.02 -104.80 -0.63 -5.47 15 14 C -0.06 -1.28 9.76 -40.78 -0.40 -1.67 15 15 C -0.28 -5.62 11.11 28.83 0.32 -5.30 15 16 S 0.03 0.69 22.93 -107.50 -2.47 -1.78 15 17 C -0.02 -0.59 6.35 -38.28 -0.24 -0.83 15 18 C -0.23 -5.33 6.16 -38.33 -0.24 -5.56 15 19 S -0.17 -3.53 23.51 -107.50 -2.53 -6.06 15 20 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.06 1.07 8.07 -51.93 -0.42 0.65 15 22 H 0.08 1.39 6.67 -51.93 -0.35 1.05 15 23 H 0.13 3.05 6.18 -52.49 -0.32 2.72 15 24 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 25 H 0.12 2.44 7.73 -52.48 -0.41 2.04 15 26 H 0.15 2.40 8.06 -52.49 -0.42 1.98 15 27 H 0.06 1.10 9.55 96.90 0.93 2.03 15 LS Contribution 261.17 15.07 3.94 3.94 Total: -1.00 -25.36 261.17 -9.23 -34.59 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -0.94 Total: 5.70 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.81 Total: -31.13 kcal Atomic # 7 Polarization: -17.02 SS G_CDS: 0.61 Total: -16.41 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.15 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -4.99 Total: -7.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.36 -9.23 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307579035.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.647 kcal (2) G-P(sol) polarization free energy of solvation -25.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds