Wall clock time and date at job start Mon Mar 30 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36325 * 119.45739 * 2 1 4 4 C 1.40430 * 120.37855 * 179.97438 * 3 2 1 5 5 C 1.40418 * 120.30798 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99943 * 154.69807 * 5 4 3 7 7 C 1.39824 * 120.00116 * 334.69778 * 5 4 3 8 8 N 1.30970 * 119.99987 * 342.16685 * 7 5 4 9 9 Si 1.86795 * 120.00232 * 162.16282 * 7 5 4 10 10 H 1.48503 * 109.47327 * 94.63774 * 9 7 5 11 11 H 1.48504 * 109.47665 * 214.63883 * 9 7 5 12 12 H 1.48500 * 109.47016 * 334.63890 * 9 7 5 13 13 C 1.48011 * 119.38397 * 0.04209 * 4 3 2 14 14 C 1.40100 * 129.23390 * 180.02562 * 13 4 3 15 15 C 1.32629 * 115.79191 * 180.02562 * 14 13 4 16 16 S 1.75524 * 110.60524 * 359.97438 * 15 14 13 17 17 C 1.39282 * 118.02962 * 359.97438 * 13 4 3 18 18 C 1.39138 * 119.45926 * 180.02562 * 2 1 3 19 19 S 1.76198 * 119.40486 * 0.27692 * 18 2 1 20 20 H 1.08999 * 109.47247 * 269.95866 * 1 2 3 21 21 H 1.08998 * 109.47135 * 29.95948 * 1 2 3 22 22 H 1.09000 * 109.47013 * 149.96478 * 1 2 3 23 23 H 1.07994 * 119.80858 * 359.97438 * 3 2 1 24 24 H 0.97001 * 120.00192 * 179.97438 * 8 7 5 25 25 H 1.08009 * 122.10518 * 0.02562 * 14 13 4 26 26 H 1.07997 * 124.69661 * 180.02562 * 15 14 13 27 27 H 1.41000 * 100.00039 * 269.72675 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1774 1.1870 0.0000 4 6 3.5815 1.2096 0.0005 5 6 4.2705 2.4331 0.0011 6 1 5.2722 2.4886 0.4012 7 6 3.6599 3.5796 -0.5164 8 7 2.6194 3.4686 -1.3040 9 14 4.3282 5.2696 -0.0844 10 1 5.2699 5.7149 -1.1428 11 1 3.2046 6.2353 0.0166 12 1 5.0413 5.2022 1.2164 13 6 4.3284 -0.0683 0.0002 14 6 5.7124 -0.2857 0.0011 15 6 6.0972 -1.5550 -0.0001 16 16 4.7040 -2.6227 -0.0018 17 6 3.5972 -1.2537 -0.0002 18 6 2.1913 -1.2115 -0.0005 19 16 1.2802 -2.7196 -0.0086 20 1 -0.3634 -0.0007 1.0276 21 1 -0.3633 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5144 23 1 1.6255 2.1153 -0.0004 24 1 2.1956 4.2639 -1.6627 25 1 6.4215 0.5290 0.0026 26 1 7.1252 -1.8857 0.0007 27 1 1.1534 -2.9366 1.3788 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307579035.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:54 Heat of formation + Delta-G solvation = 13.699057 kcal Electronic energy + Delta-G solvation = -13557.668136 eV Core-core repulsion = 11303.673054 eV Total energy + Delta-G solvation = -2253.995083 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90256 -36.50985 -35.89321 -32.07859 -31.26555 -27.77672 -26.81942 -24.05025 -22.70180 -20.86895 -19.38910 -18.60551 -17.53544 -16.74909 -16.36463 -15.95582 -15.18915 -14.83633 -14.54083 -14.38213 -13.72688 -13.51441 -13.35158 -13.00988 -12.91217 -12.71929 -12.44648 -12.12886 -11.97463 -11.55397 -11.49237 -11.24439 -10.94402 -10.00642 -9.08523 -8.87491 -8.81888 -8.55975 -6.51435 0.18468 0.50294 0.91868 1.19186 1.36903 1.38206 1.47643 1.55003 1.77459 2.00624 2.11240 2.51658 3.46779 4.24769 4.33477 4.58962 4.67095 4.78664 4.87125 4.93585 5.11025 5.14859 5.24081 5.35033 5.49742 5.79650 5.85932 5.97816 6.05890 6.42448 6.59776 6.75478 8.00315 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.008908 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.201507 B = 3142.607273 C = 4224.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.005 3.995 3 C -0.225 4.225 4 C 0.137 3.863 5 C -0.433 4.433 6 H 0.095 0.905 7 C 0.035 3.965 8 N -0.779 5.779 9 Si 0.993 3.007 10 H -0.258 1.258 11 H -0.260 1.260 12 H -0.254 1.254 13 C -0.223 4.223 14 C -0.084 4.084 15 C -0.264 4.264 16 S 0.062 5.938 17 C -0.058 4.058 18 C -0.254 4.254 19 S -0.150 6.150 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.302 0.698 25 H 0.136 0.864 26 H 0.184 0.816 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -0.847 1.985 2.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.001 4.001 3 C -0.248 4.248 4 C 0.131 3.869 5 C -0.458 4.458 6 H 0.113 0.887 7 C -0.187 4.187 8 N -0.400 5.400 9 Si 0.812 3.188 10 H -0.182 1.182 11 H -0.184 1.184 12 H -0.177 1.177 13 C -0.231 4.231 14 C -0.113 4.113 15 C -0.397 4.397 16 S 0.324 5.676 17 C -0.177 4.177 18 C -0.374 4.374 19 S 0.008 5.992 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.134 0.866 24 H 0.114 0.886 25 H 0.154 0.846 26 H 0.201 0.799 27 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.289 -3.117 1.575 3.504 hybrid contribution 0.824 2.948 0.904 3.192 sum 1.113 -0.169 2.479 2.723 Atomic orbital electron populations 1.20913 0.90200 1.03183 1.02279 1.19674 0.96408 0.91615 0.92362 1.20590 0.93681 0.96449 1.14113 1.18960 0.92301 0.90617 0.85016 1.20038 1.02265 0.92730 1.30778 0.88679 1.27064 0.94044 1.05849 0.91719 1.69924 1.16690 1.34977 1.18427 0.85006 0.79259 0.74314 0.80257 1.18188 1.18449 1.17732 1.19475 0.93158 0.93061 1.17447 1.19818 0.94151 0.97179 1.00199 1.25121 1.02363 0.95539 1.16707 1.83440 0.95934 1.08480 1.79780 1.22834 0.96711 0.96293 1.01823 1.19560 0.91371 0.94066 1.32444 1.85888 1.73124 1.28726 1.11499 0.91073 0.91766 0.89737 0.86576 0.88615 0.84631 0.79883 0.96778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 9.51 71.24 0.68 -3.40 15 2 C 0.00 0.21 5.84 -20.09 -0.12 0.09 15 3 C -0.23 -11.37 8.19 22.36 0.18 -11.19 15 4 C 0.14 7.06 5.75 -19.62 -0.11 6.95 15 5 C -0.43 -20.92 8.80 23.19 0.20 -20.71 15 6 H 0.10 4.33 7.52 -2.91 -0.02 4.30 15 7 C 0.03 1.54 5.12 85.21 0.44 1.98 15 8 N -0.78 -36.03 11.00 21.81 0.24 -35.79 15 9 Si 0.99 32.77 29.59 68.60 2.03 34.80 15 10 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 11 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 12 H -0.25 -8.27 7.11 99.48 0.71 -7.56 15 13 C -0.22 -11.03 6.02 -19.98 -0.12 -11.15 15 14 C -0.08 -3.59 9.76 21.56 0.21 -3.38 15 15 C -0.26 -9.84 11.11 66.66 0.74 -9.10 15 16 S 0.06 2.47 22.93 -56.49 -1.30 1.18 15 17 C -0.06 -2.78 6.35 23.11 0.15 -2.63 15 18 C -0.25 -11.92 6.16 23.08 0.14 -11.77 15 19 S -0.15 -5.88 23.51 -56.49 -1.33 -7.21 15 20 H 0.07 2.41 8.14 -2.39 -0.02 2.40 15 21 H 0.06 2.31 8.07 -2.39 -0.02 2.29 15 22 H 0.08 3.00 6.67 -2.39 -0.02 2.98 15 23 H 0.12 5.89 6.18 -2.91 -0.02 5.87 15 24 H 0.30 12.30 8.30 -92.71 -0.77 11.53 15 25 H 0.14 5.30 7.73 -2.91 -0.02 5.28 15 26 H 0.18 5.33 8.06 -2.91 -0.02 5.31 15 27 H 0.07 2.49 9.55 73.80 0.70 3.19 15 Total: -1.00 -54.63 261.17 3.95 -50.67 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.92 Total: 20.65 kcal Atomic # 6 Polarization: -66.71 SS G_CDS: 2.39 Total: -64.32 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.24 Total: -35.79 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.62 Total: -6.03 kcal Total: -54.63 3.95 -50.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307579035.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.372 kcal (2) G-P(sol) polarization free energy of solvation -54.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds