Wall clock time and date at job start Mon Mar 30 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35606 * 119.89728 * 2 1 4 4 C 1.40744 * 121.11425 * 179.72795 * 3 2 1 5 5 S 1.76039 * 130.14634 * 180.19619 * 4 3 2 6 6 C 1.75272 * 92.21840 * 180.31846 * 5 4 3 7 7 C 1.31853 * 111.38849 * 0.02562 * 6 5 4 8 8 C 1.39641 * 120.25087 * 0.54629 * 4 3 2 9 9 C 1.41659 * 118.97428 * 359.73562 * 8 4 3 10 10 S 1.76195 * 120.12688 * 180.02562 * 9 8 4 11 11 C 1.41021 * 119.75303 * 0.02562 * 9 8 4 12 12 C 1.40891 * 120.14969 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99791 * 225.91203 * 12 11 9 14 14 C 1.39712 * 119.99821 * 45.90832 * 12 11 9 15 15 N 1.31039 * 120.00235 * 20.66396 * 14 12 11 16 16 Si 1.86798 * 119.99711 * 200.66610 * 14 12 11 17 17 H 1.48500 * 109.47580 * 89.99931 * 16 14 12 18 18 H 1.48507 * 109.47028 * 210.00043 * 16 14 12 19 19 H 1.48501 * 109.47451 * 329.99670 * 16 14 12 20 20 H 1.08995 * 109.47594 * 269.72754 * 1 2 3 21 21 H 1.09000 * 109.47005 * 149.72420 * 1 2 3 22 22 H 1.09007 * 109.47158 * 29.72939 * 1 2 3 23 23 H 1.07998 * 119.44387 * 0.02562 * 3 2 1 24 24 H 1.08003 * 124.30472 * 180.02562 * 6 5 4 25 25 H 1.07999 * 122.56838 * 180.02562 * 7 6 5 26 26 H 1.41006 * 99.99737 * 269.97827 * 10 9 8 27 27 H 0.96999 * 120.00050 * 181.33910 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.1756 0.0000 4 6 3.5900 1.2055 0.0057 5 16 4.6961 2.5749 0.0116 6 6 6.1012 1.5272 0.0065 7 6 5.7528 0.2556 0.0002 8 6 4.3190 0.0145 0.0000 9 6 3.6202 -1.2178 -0.0058 10 16 4.5096 -2.7387 -0.0124 11 6 2.2100 -1.2226 -0.0063 12 6 1.5066 -2.4433 -0.0127 13 1 0.6734 -2.5829 -0.6855 14 6 1.8869 -3.4732 0.8514 15 7 2.5951 -3.2036 1.9205 16 14 1.3861 -5.2346 0.4825 17 1 2.4313 -5.8826 -0.3498 18 1 1.2331 -5.9828 1.7562 19 1 0.0954 -5.2388 -0.2520 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3633 -0.8875 -0.5181 22 1 -0.3634 0.8925 -0.5097 23 1 1.6322 2.1046 0.0004 24 1 7.1225 1.8786 0.0082 25 1 6.4770 -0.5456 -0.0033 26 1 4.6332 -2.9440 -1.4019 27 1 2.8756 -3.9210 2.5100 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307579436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:47 Heat of formation + Delta-G solvation = 35.132740 kcal Electronic energy + Delta-G solvation = -13726.445095 eV Core-core repulsion = 11473.379446 eV Total energy + Delta-G solvation = -2253.065648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.30314 -35.16885 -33.32843 -30.19190 -29.82763 -26.22882 -24.91026 -22.07305 -21.28788 -19.35443 -17.12826 -16.93573 -15.79801 -15.09131 -14.77478 -13.93185 -13.49793 -13.16785 -13.08091 -12.61138 -12.17506 -12.09431 -11.39250 -11.32764 -11.30633 -11.07323 -10.74702 -10.63873 -10.24829 -9.82130 -9.75202 -9.45759 -9.04538 -8.21500 -7.37472 -6.84735 -6.71195 -6.32801 -4.49328 1.65537 2.36629 2.45132 2.85480 3.07821 3.14653 3.16462 3.21077 3.33830 3.98885 4.04612 4.64662 5.22115 5.43950 5.86539 5.99259 6.14331 6.30756 6.42243 6.52023 6.67456 6.68911 6.93773 7.06911 7.18258 7.30239 7.43785 7.75493 7.79426 8.32754 8.64340 8.80299 10.24865 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.009199 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.570502 B = 3043.225637 C = 3797.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.126 4.126 3 C -0.059 4.059 4 C -0.217 4.217 5 S 0.006 5.994 6 C -0.204 4.204 7 C -0.110 4.110 8 C -0.007 4.007 9 C -0.156 4.156 10 S -0.123 6.123 11 C 0.162 3.838 12 C -0.478 4.478 13 H 0.086 0.914 14 C 0.114 3.886 15 N -0.765 5.765 16 Si 0.899 3.101 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.266 1.266 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.042 0.958 23 H 0.100 0.900 24 H 0.153 0.847 25 H 0.138 0.862 26 H 0.034 0.966 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 3.307 -2.139 4.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.081 4.081 4 C -0.333 4.333 5 S 0.265 5.735 6 C -0.337 4.337 7 C -0.142 4.142 8 C -0.017 4.017 9 C -0.273 4.273 10 S 0.034 5.966 11 C 0.156 3.844 12 C -0.506 4.506 13 H 0.104 0.896 14 C -0.109 4.109 15 N -0.388 5.388 16 Si 0.723 3.277 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.190 1.190 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.118 0.882 24 H 0.170 0.830 25 H 0.156 0.844 26 H 0.000 1.000 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.770 3.955 -1.667 4.643 hybrid contribution -0.243 -1.441 -0.863 1.697 sum 1.527 2.514 -2.530 3.880 Atomic orbital electron populations 1.20509 0.92063 1.00872 1.01162 1.19778 0.95269 0.92591 1.05412 1.19727 0.90471 0.97001 1.00873 1.21875 0.96664 0.94033 1.20678 1.83365 0.96956 1.10485 1.82701 1.24702 1.01253 0.96737 1.11000 1.21118 0.95086 0.96206 1.01782 1.19149 0.91021 0.92677 0.98817 1.20943 0.94487 0.90402 1.21443 1.86213 1.72001 1.31157 1.07216 1.17456 0.89852 0.92225 0.84905 1.19195 1.14908 0.97029 1.19475 0.89635 1.25459 0.92231 1.00180 0.92999 1.69722 1.25543 1.35380 1.08199 0.86466 0.79740 0.82516 0.78954 1.18883 1.20353 1.19034 0.92401 0.91416 0.93864 0.88167 0.82987 0.84424 1.00043 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.60 36.00 0.35 -1.34 15 2 C -0.13 -2.86 5.88 -104.51 -0.61 -3.48 15 3 C -0.06 -1.27 9.60 -39.58 -0.38 -1.65 15 4 C -0.22 -4.83 6.50 -38.11 -0.25 -5.08 15 5 S 0.01 0.10 23.24 -107.50 -2.50 -2.39 15 6 C -0.20 -3.62 11.02 28.83 0.32 -3.31 15 7 C -0.11 -2.23 9.95 -38.63 -0.38 -2.61 15 8 C -0.01 -0.16 6.00 -105.22 -0.63 -0.80 15 9 C -0.16 -3.91 5.87 -37.22 -0.22 -4.13 15 10 S -0.12 -2.91 21.14 -107.50 -2.27 -5.18 15 11 C 0.16 4.07 5.24 -106.78 -0.56 3.51 15 12 C -0.48 -11.83 7.57 -38.03 -0.29 -12.12 15 13 H 0.09 2.03 6.96 -52.49 -0.37 1.67 15 14 C 0.11 2.74 3.63 -17.34 -0.06 2.67 15 15 N -0.77 -19.32 11.19 55.54 0.62 -18.70 15 16 Si 0.90 18.46 29.61 -169.99 -5.03 13.43 15 17 H -0.26 -5.47 7.11 56.52 0.40 -5.06 15 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 20 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 21 H 0.07 1.28 6.55 -51.93 -0.34 0.94 15 22 H 0.04 0.70 8.07 -51.93 -0.42 0.28 15 23 H 0.10 1.90 8.06 -52.49 -0.42 1.48 15 24 H 0.15 2.15 8.06 -52.48 -0.42 1.73 15 25 H 0.14 2.58 7.94 -52.49 -0.42 2.16 15 26 H 0.03 0.78 9.55 96.90 0.93 1.70 15 27 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 LS Contribution 258.97 15.07 3.90 3.90 Total: -1.00 -26.52 258.97 -9.02 -35.54 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -1.02 Total: 1.74 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -2.72 Total: -28.33 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.62 Total: -18.70 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -4.77 Total: -7.58 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.52 -9.02 -35.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307579436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.669 kcal (2) G-P(sol) polarization free energy of solvation -26.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds