Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35606 * 119.89728 * 2 1 4 4 C 1.40744 * 121.11425 * 179.72795 * 3 2 1 5 5 S 1.76039 * 130.14634 * 180.19619 * 4 3 2 6 6 C 1.75272 * 92.21840 * 180.31846 * 5 4 3 7 7 C 1.31853 * 111.38849 * 0.02562 * 6 5 4 8 8 C 1.39641 * 120.25087 * 0.54629 * 4 3 2 9 9 C 1.41659 * 118.97428 * 359.73562 * 8 4 3 10 10 S 1.76195 * 120.12688 * 180.02562 * 9 8 4 11 11 C 1.41021 * 119.75303 * 0.02562 * 9 8 4 12 12 C 1.40891 * 120.14969 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99791 * 225.91203 * 12 11 9 14 14 C 1.39712 * 119.99821 * 45.90832 * 12 11 9 15 15 N 1.31039 * 120.00235 * 20.66396 * 14 12 11 16 16 Si 1.86798 * 119.99711 * 200.66610 * 14 12 11 17 17 H 1.48500 * 109.47580 * 89.99931 * 16 14 12 18 18 H 1.48507 * 109.47028 * 210.00043 * 16 14 12 19 19 H 1.48501 * 109.47451 * 329.99670 * 16 14 12 20 20 H 1.08995 * 109.47594 * 269.72754 * 1 2 3 21 21 H 1.09000 * 109.47005 * 149.72420 * 1 2 3 22 22 H 1.09007 * 109.47158 * 29.72939 * 1 2 3 23 23 H 1.07998 * 119.44387 * 0.02562 * 3 2 1 24 24 H 1.08003 * 124.30472 * 180.02562 * 6 5 4 25 25 H 1.07999 * 122.56838 * 180.02562 * 7 6 5 26 26 H 1.41006 * 99.99737 * 269.97827 * 10 9 8 27 27 H 0.96999 * 120.00050 * 181.33910 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.1756 0.0000 4 6 3.5900 1.2055 0.0057 5 16 4.6961 2.5749 0.0116 6 6 6.1012 1.5272 0.0065 7 6 5.7528 0.2556 0.0002 8 6 4.3190 0.0145 0.0000 9 6 3.6202 -1.2178 -0.0058 10 16 4.5096 -2.7387 -0.0124 11 6 2.2100 -1.2226 -0.0063 12 6 1.5066 -2.4433 -0.0127 13 1 0.6734 -2.5829 -0.6855 14 6 1.8869 -3.4732 0.8514 15 7 2.5951 -3.2036 1.9205 16 14 1.3861 -5.2346 0.4825 17 1 2.4313 -5.8826 -0.3498 18 1 1.2331 -5.9828 1.7562 19 1 0.0954 -5.2388 -0.2520 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3633 -0.8875 -0.5181 22 1 -0.3634 0.8925 -0.5097 23 1 1.6322 2.1046 0.0004 24 1 7.1225 1.8786 0.0082 25 1 6.4770 -0.5456 -0.0033 26 1 4.6332 -2.9440 -1.4019 27 1 2.8756 -3.9210 2.5100 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307579436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = 22.459801 kcal Electronic energy + Delta-G solvation = -13726.994635 eV Core-core repulsion = 11473.379446 eV Total energy + Delta-G solvation = -2253.615188 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97907 -36.80408 -35.07064 -31.80340 -31.56160 -27.91898 -26.58687 -23.74589 -22.92449 -21.02761 -18.82351 -18.62770 -17.54596 -16.78321 -16.44016 -15.63332 -15.13114 -14.72904 -14.69846 -14.27264 -13.83897 -13.66650 -13.08592 -12.99612 -12.85529 -12.67729 -12.45412 -12.23201 -11.81694 -11.54641 -11.37582 -11.17759 -10.79962 -9.90075 -9.06701 -8.58570 -8.39427 -8.13735 -6.33834 0.02426 0.60754 0.93208 1.23898 1.41057 1.45891 1.50714 1.55117 1.68762 2.22563 2.31401 2.86412 3.43052 4.01554 4.25778 4.44665 4.63215 4.75300 4.87616 5.01842 5.11579 5.13518 5.28220 5.35884 5.47325 5.63954 5.74861 5.98934 6.09264 6.51739 6.85464 6.98024 8.47680 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.009199 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.570502 B = 3043.225637 C = 3797.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.146 4.146 3 C -0.063 4.063 4 C -0.243 4.243 5 S 0.056 5.944 6 C -0.181 4.181 7 C -0.141 4.141 8 C -0.030 4.030 9 C -0.190 4.190 10 S -0.123 6.123 11 C 0.135 3.865 12 C -0.501 4.501 13 H 0.086 0.914 14 C 0.085 3.915 15 N -0.801 5.801 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.258 1.258 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.128 0.872 24 H 0.196 0.804 25 H 0.145 0.855 26 H 0.034 0.966 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 4.625 -2.414 5.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.150 4.150 3 C -0.084 4.084 4 C -0.358 4.358 5 S 0.316 5.684 6 C -0.314 4.314 7 C -0.172 4.172 8 C -0.040 4.040 9 C -0.306 4.306 10 S 0.034 5.966 11 C 0.129 3.871 12 C -0.530 4.530 13 H 0.103 0.897 14 C -0.134 4.134 15 N -0.426 5.426 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.182 1.182 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.146 0.854 24 H 0.213 0.787 25 H 0.163 0.837 26 H -0.001 1.001 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.134 5.289 -1.948 6.026 hybrid contribution -0.281 -1.634 -0.792 1.838 sum 1.852 3.654 -2.740 4.929 Atomic orbital electron populations 1.20491 0.89828 1.02068 1.01556 1.20204 0.97167 0.92318 1.05351 1.20078 0.90746 0.97809 0.99814 1.22411 0.97734 0.95798 1.19899 1.83163 0.95570 1.08104 1.81568 1.25241 1.03166 0.95689 1.07326 1.21162 0.93800 0.97675 1.04568 1.19555 0.92913 0.92633 0.98880 1.21273 0.95040 0.91404 1.22911 1.86036 1.71789 1.31568 1.07166 1.17862 0.90444 0.93440 0.85380 1.19357 1.15554 0.97881 1.20188 0.89656 1.26053 0.91862 1.03098 0.92360 1.69778 1.27304 1.36349 1.09165 0.85642 0.79507 0.78401 0.78947 1.19206 1.19550 1.18185 0.92258 0.91958 0.90916 0.85394 0.78706 0.83729 1.00126 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.06 9.60 71.23 0.68 -2.38 15 2 C -0.15 -6.62 5.88 -19.79 -0.12 -6.73 15 3 C -0.06 -2.65 9.60 22.27 0.21 -2.44 15 4 C -0.24 -10.51 6.50 23.22 0.15 -10.36 15 5 S 0.06 1.90 23.24 -56.49 -1.31 0.59 15 6 C -0.18 -5.83 11.02 67.01 0.74 -5.09 15 7 C -0.14 -5.49 9.95 23.31 0.23 -5.26 15 8 C -0.03 -1.39 6.00 -20.25 -0.12 -1.51 15 9 C -0.19 -9.69 5.87 23.80 0.14 -9.55 15 10 S -0.12 -5.91 21.14 -56.49 -1.19 -7.11 15 11 C 0.13 6.90 5.24 -21.26 -0.11 6.79 15 12 C -0.50 -25.33 7.57 23.28 0.18 -25.16 15 13 H 0.09 4.15 6.96 -2.91 -0.02 4.13 15 14 C 0.09 4.17 3.63 85.17 0.31 4.47 15 15 N -0.80 -41.33 11.19 21.79 0.24 -41.08 15 16 Si 0.95 38.08 29.61 68.60 2.03 40.11 15 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 19 H -0.26 -9.86 7.11 99.48 0.71 -9.16 15 20 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.06 2.34 6.55 -2.39 -0.02 2.33 15 22 H 0.07 2.21 8.07 -2.38 -0.02 2.19 15 23 H 0.13 4.54 8.06 -2.91 -0.02 4.52 15 24 H 0.20 4.53 8.06 -2.91 -0.02 4.50 15 25 H 0.15 5.31 7.94 -2.91 -0.02 5.29 15 26 H 0.03 1.55 9.55 73.80 0.70 2.26 15 27 H 0.29 13.76 8.30 -92.71 -0.77 12.99 15 Total: -1.00 -57.20 258.97 3.97 -53.22 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.91 Total: 11.49 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 2.29 Total: -57.21 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.24 Total: -41.08 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.51 Total: -6.52 kcal Total: -57.20 3.97 -53.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307579436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.681 kcal (2) G-P(sol) polarization free energy of solvation -57.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds