Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39285 * 119.88789 * 2 1 4 4 S 1.76006 * 130.18133 * 0.02562 * 3 2 1 5 5 C 1.75451 * 91.76985 * 180.02562 * 4 3 2 6 6 C 1.39855 * 124.82487 * 179.97438 * 5 4 3 7 7 H 1.07997 * 119.99618 * 180.02562 * 6 5 4 8 8 C 1.40047 * 120.00366 * 0.02562 * 6 5 4 9 9 N 1.30856 * 119.99921 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00208 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46901 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47163 * 120.00356 * 10 8 6 13 13 H 1.48501 * 109.46821 * 239.99932 * 10 8 6 14 14 C 1.37030 * 110.34504 * 359.46018 * 5 4 3 15 15 C 1.39606 * 115.06718 * 0.70517 * 14 5 4 16 16 C 1.42118 * 128.41444 * 179.16811 * 15 14 5 17 17 C 1.35635 * 120.59977 * 180.02562 * 16 15 14 18 18 C 1.38630 * 119.88517 * 180.27903 * 2 1 3 19 19 S 1.76204 * 119.98456 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 269.72025 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72125 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72106 * 1 2 3 23 23 H 0.96996 * 120.00005 * 180.02562 * 9 8 6 24 24 H 1.08000 * 122.46656 * 179.97438 * 14 5 4 25 25 H 1.08004 * 119.69972 * 0.02979 * 16 15 14 26 26 H 1.07995 * 119.72252 * 180.02562 * 17 16 15 27 27 H 1.34498 * 102.99856 * 89.99645 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.2076 0.0000 4 16 1.6011 2.8622 0.0006 5 6 3.2313 3.5110 -0.0007 6 6 3.5488 4.8730 -0.0013 7 1 4.5823 5.1864 -0.0025 8 6 2.5267 5.8304 -0.0005 9 7 1.2745 5.4506 0.0015 10 14 2.9509 7.6496 -0.0021 11 1 4.4268 7.8137 -0.0036 12 1 2.3799 8.2900 -1.2141 13 1 2.3832 8.2913 1.2108 14 6 4.1490 2.4934 0.0106 15 6 3.6061 1.2072 0.0048 16 6 4.2887 -0.0393 -0.0028 17 6 3.5963 -1.2056 -0.0083 18 6 2.1978 -1.2019 -0.0059 19 16 1.3133 -2.7259 -0.0126 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 0.5666 6.1137 0.0017 24 1 5.2139 2.6732 0.0115 25 1 5.3686 -0.0581 -0.0041 26 1 4.1294 -2.1447 -0.0136 27 1 1.1609 -2.9814 -1.3242 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307617266.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = 7.577710 kcal Electronic energy + Delta-G solvation = -13286.106330 eV Core-core repulsion = 11031.845806 eV Total energy + Delta-G solvation = -2254.260524 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.31482 -35.22917 -33.41582 -31.76167 -29.15636 -26.15308 -25.59613 -22.46422 -20.81869 -19.21570 -17.91247 -17.30078 -15.81502 -15.49265 -14.69119 -14.13528 -14.00565 -13.28690 -13.00484 -12.43536 -12.18586 -12.04261 -12.03112 -11.57634 -11.46488 -11.18855 -10.98476 -10.59850 -10.38105 -10.03478 -9.98800 -9.36112 -9.14281 -8.37833 -7.55974 -7.50409 -7.31708 -6.47318 -4.85270 1.64795 2.33136 2.42352 2.70040 2.76431 2.84488 3.13995 3.30431 3.47226 3.57608 3.74585 4.47836 4.95368 5.62706 5.74512 5.95278 6.20948 6.25056 6.40076 6.50746 6.61209 6.72459 6.97960 7.00844 7.21117 7.33943 7.40386 7.62534 7.74377 7.92775 8.16699 8.24815 9.48155 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.049830 B = 0.006147 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.778574 B = 4553.872834 C = 5094.769767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.038 3.962 3 C -0.281 4.281 4 S 0.149 5.851 5 C 0.055 3.945 6 C -0.370 4.370 7 H 0.102 0.898 8 C 0.050 3.950 9 N -0.767 5.767 10 Si 0.941 3.059 11 H -0.254 1.254 12 H -0.266 1.266 13 H -0.266 1.266 14 C -0.362 4.362 15 C 0.043 3.957 16 C -0.168 4.168 17 C -0.059 4.059 18 C -0.198 4.198 19 S -0.147 6.147 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.304 0.696 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -1.678 -0.305 2.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 C -0.397 4.397 4 S 0.409 5.591 5 C -0.065 4.065 6 C -0.404 4.404 7 H 0.120 0.880 8 C -0.172 4.172 9 N -0.393 5.393 10 Si 0.763 3.237 11 H -0.178 1.178 12 H -0.191 1.191 13 H -0.190 1.190 14 C -0.387 4.387 15 C 0.035 3.965 16 C -0.190 4.190 17 C -0.082 4.082 18 C -0.313 4.313 19 S 0.010 5.990 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -3.309 -1.759 -0.087 3.748 hybrid contribution 2.146 0.837 -1.060 2.536 sum -1.162 -0.922 -1.147 1.875 Atomic orbital electron populations 1.20938 0.91950 1.02155 1.02518 1.19276 0.94495 0.90293 0.92803 1.23453 0.97355 1.00436 1.18416 1.84770 1.06701 0.89278 1.78378 1.21575 0.94803 0.96455 0.93679 1.19451 0.95646 0.88963 1.36337 0.87987 1.26390 0.94116 1.04348 0.92380 1.68679 1.00868 1.38328 1.31402 0.85666 0.80611 0.78164 0.79237 1.17751 1.19080 1.19043 1.19663 0.98222 0.89839 1.30934 1.18143 0.91753 0.93406 0.93225 1.20466 0.98193 0.91186 1.09136 1.20486 0.92435 0.97188 0.98053 1.20256 0.94865 0.92227 1.23919 1.85382 1.75397 1.27877 1.10343 0.90882 0.91162 0.91998 0.88310 0.87329 0.87619 0.87173 0.98759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.42 36.01 0.34 -1.82 15 2 C 0.04 0.83 5.92 -104.09 -0.62 0.21 15 3 C -0.28 -6.70 6.29 -38.34 -0.24 -6.94 15 4 S 0.15 3.56 19.38 -107.50 -2.08 1.47 15 5 C 0.05 1.38 6.11 -39.41 -0.24 1.14 15 6 C -0.37 -8.76 9.26 -38.30 -0.35 -9.11 15 7 H 0.10 2.27 7.85 -52.49 -0.41 1.86 15 8 C 0.05 1.09 5.50 -17.29 -0.10 1.00 15 9 N -0.77 -17.10 10.58 55.55 0.59 -16.51 15 10 Si 0.94 16.05 29.56 -169.99 -5.03 11.03 15 11 H -0.25 -4.29 7.11 56.52 0.40 -3.89 15 12 H -0.27 -4.47 7.11 56.52 0.40 -4.06 15 13 H -0.27 -4.46 7.11 56.52 0.40 -4.06 15 14 C -0.36 -8.99 10.13 -39.51 -0.40 -9.39 15 15 C 0.04 1.05 5.86 -107.04 -0.63 0.42 15 16 C -0.17 -3.63 10.02 -39.03 -0.39 -4.02 15 17 C -0.06 -1.19 9.69 -39.91 -0.39 -1.57 15 18 C -0.20 -4.08 6.13 -38.83 -0.24 -4.32 15 19 S -0.15 -2.55 23.94 -107.50 -2.57 -5.13 15 20 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 21 H 0.07 1.17 6.75 -51.93 -0.35 0.82 15 22 H 0.06 1.12 7.56 -51.93 -0.39 0.73 15 23 H 0.30 5.98 8.30 -40.82 -0.34 5.64 15 24 H 0.11 2.56 8.06 -52.49 -0.42 2.14 15 25 H 0.11 2.04 8.06 -52.48 -0.42 1.61 15 26 H 0.11 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.05 0.79 9.07 97.61 0.89 1.67 15 LS Contribution 260.97 15.07 3.93 3.93 Total: -1.00 -25.33 260.97 -9.51 -34.84 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -1.09 Total: 4.78 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -3.25 Total: -34.42 kcal Atomic # 7 Polarization: -17.10 SS G_CDS: 0.59 Total: -16.51 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.03 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -4.66 Total: -3.65 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.33 -9.51 -34.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307617266.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.416 kcal (2) G-P(sol) polarization free energy of solvation -25.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds