Wall clock time and date at job start Mon Mar 30 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38653 * 119.88255 * 2 1 4 4 C 1.37662 * 120.12512 * 179.48844 * 3 2 1 5 5 C 1.39788 * 120.48965 * 0.86041 * 4 3 2 6 6 S 1.75879 * 129.68364 * 179.09005 * 5 4 3 7 7 C 1.75181 * 92.77381 * 179.97438 * 6 5 4 8 8 S 1.76195 * 124.58795 * 179.97438 * 7 6 5 9 9 C 1.37814 * 110.81938 * 0.02562 * 7 6 5 10 10 C 1.40593 * 123.26561 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99684 * 322.85789 * 10 9 7 12 12 C 1.39470 * 120.00428 * 142.85738 * 10 9 7 13 13 N 1.31331 * 119.99907 * 336.03317 * 12 10 9 14 14 Si 1.86804 * 120.00250 * 155.75779 * 12 10 9 15 15 H 1.48504 * 109.46957 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47532 * 120.00093 * 14 12 10 17 17 H 1.48500 * 109.46970 * 240.00334 * 14 12 10 18 18 C 1.39323 * 119.63987 * 359.37695 * 5 4 3 19 19 C 1.37346 * 119.88270 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47295 * 269.97248 * 1 2 3 21 21 H 1.09003 * 109.47570 * 29.97340 * 1 2 3 22 22 H 1.09004 * 109.46916 * 149.97247 * 1 2 3 23 23 H 1.08000 * 119.93639 * 0.02562 * 3 2 1 24 24 H 1.08004 * 119.75369 * 179.97438 * 4 3 2 25 25 H 1.41002 * 100.00396 * 266.24447 * 8 7 6 26 26 H 0.96994 * 119.99949 * 354.57421 * 13 12 10 27 27 H 1.07998 * 119.78255 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.2022 0.0000 4 6 3.5743 1.2080 0.0106 5 6 4.2887 0.0066 0.0034 6 16 6.0261 -0.2669 -0.0076 7 6 5.8377 -2.0086 -0.0100 8 16 7.1723 -3.1589 -0.0210 9 6 4.5044 -2.3571 -0.0032 10 6 4.0556 -3.6894 -0.0028 11 1 4.5867 -4.4383 -0.5716 12 6 2.9245 -4.0441 0.7322 13 7 2.5549 -3.3160 1.7607 14 14 1.9310 -5.5504 0.2488 15 1 2.5485 -6.1899 -0.9407 16 1 1.9141 -6.5154 1.3774 17 1 0.5402 -5.1430 -0.0749 18 6 3.6001 -1.2046 -0.0015 19 6 2.1912 -1.1909 -0.0005 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 1.6548 2.1358 0.0004 24 1 4.1063 2.1480 0.0101 25 1 7.2895 -3.3849 -1.4079 26 1 3.1106 -2.5786 2.0577 27 1 1.6458 -2.1230 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307729704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:32 Heat of formation + Delta-G solvation = 16.771076 kcal Electronic energy + Delta-G solvation = -13704.965616 eV Core-core repulsion = 11451.103746 eV Total energy + Delta-G solvation = -2253.861870 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.86143 -35.39741 -32.92950 -31.11318 -28.91923 -26.61594 -25.35600 -22.25610 -21.41285 -19.66974 -17.79471 -16.73660 -15.75821 -14.73935 -14.68648 -14.24958 -13.87383 -13.48609 -13.22033 -12.94688 -12.67710 -11.95162 -11.76888 -11.74756 -11.26623 -10.96672 -10.77499 -10.53917 -10.46699 -9.87642 -9.65958 -9.50260 -9.00561 -8.61554 -7.65341 -7.35953 -6.94256 -6.73670 -4.67683 1.56472 1.95779 2.58521 2.83399 3.05445 3.09712 3.24792 3.41473 3.53897 3.87251 3.94820 4.35628 4.87165 5.34054 5.43903 5.61050 5.75918 5.97814 6.08753 6.21111 6.22776 6.52771 6.71777 6.90781 6.95493 7.19686 7.32573 7.58614 7.75519 7.78855 8.27805 8.54212 9.81137 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.014388 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.518398 B = 1945.648954 C = 3688.944704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.108 4.108 5 C -0.111 4.111 6 S 0.005 5.995 7 C -0.384 4.384 8 S -0.084 6.084 9 C 0.134 3.866 10 C -0.470 4.470 11 H 0.090 0.910 12 C 0.036 3.964 13 N -0.777 5.777 14 Si 1.067 2.933 15 H -0.274 1.274 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.068 4.068 19 C -0.055 4.055 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.030 0.970 26 H 0.299 0.701 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 3.500 -2.319 5.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.129 4.129 4 C -0.132 4.132 5 C -0.228 4.228 6 S 0.263 5.737 7 C -0.611 4.611 8 S 0.071 5.929 9 C 0.122 3.878 10 C -0.501 4.501 11 H 0.108 0.892 12 C -0.187 4.187 13 N -0.399 5.399 14 Si 0.890 3.110 15 H -0.199 1.199 16 H -0.198 1.198 17 H -0.197 1.197 18 C -0.079 4.079 19 C -0.075 4.075 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.132 0.868 25 H -0.004 1.004 26 H 0.112 0.888 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.925 2.903 -1.676 4.449 hybrid contribution -0.422 0.698 -1.299 1.534 sum -3.346 3.601 -2.975 5.746 Atomic orbital electron populations 1.20650 0.91643 1.01833 1.01786 1.19568 0.95643 0.93015 1.03949 1.20707 0.93342 0.97057 1.01827 1.20356 0.93637 0.95373 1.03849 1.22623 0.98193 0.96494 1.05456 1.83108 1.00729 1.05279 1.84579 1.23719 0.96639 0.93831 1.46925 1.85644 1.41177 1.56644 1.09426 1.17897 0.88806 0.92341 0.88753 1.20165 1.10159 0.93822 1.25939 0.89201 1.27118 0.95539 1.03277 0.92815 1.70590 1.38391 1.14113 1.16837 0.83592 0.76116 0.74073 0.77189 1.19867 1.19841 1.19671 1.19618 0.93602 0.92424 1.02249 1.21180 0.92333 0.97833 0.96116 0.91730 0.92328 0.91989 0.86553 0.86819 1.00422 0.88797 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 10.00 36.00 0.36 -1.15 15 2 C -0.12 -2.21 5.86 -104.80 -0.61 -2.83 15 3 C -0.11 -1.91 9.69 -39.64 -0.38 -2.29 15 4 C -0.11 -2.08 10.06 -39.21 -0.39 -2.47 15 5 C -0.11 -2.50 6.41 -38.60 -0.25 -2.75 15 6 S 0.01 0.12 23.18 -107.50 -2.49 -2.37 15 7 C -0.38 -9.66 6.80 30.58 0.21 -9.45 15 8 S -0.08 -1.91 25.53 -107.50 -2.74 -4.66 15 9 C 0.13 3.45 5.01 -105.84 -0.53 2.92 15 10 C -0.47 -11.93 8.46 -38.24 -0.32 -12.25 15 11 H 0.09 2.29 7.86 -52.48 -0.41 1.88 15 12 C 0.04 0.84 3.86 -17.31 -0.07 0.78 15 13 N -0.78 -19.28 11.67 55.53 0.65 -18.63 15 14 Si 1.07 20.34 29.99 -169.99 -5.10 15.24 15 15 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 16 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 17 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 18 C -0.07 -1.65 5.08 -105.16 -0.53 -2.18 15 19 C -0.06 -1.21 8.01 -38.90 -0.31 -1.52 15 20 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.06 0.72 8.08 -51.93 -0.42 0.30 15 22 H 0.06 0.89 8.08 -51.93 -0.42 0.47 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 24 H 0.11 1.88 8.06 -52.48 -0.42 1.46 15 25 H 0.03 0.67 9.55 96.90 0.93 1.59 15 26 H 0.30 7.88 6.98 -40.82 -0.29 7.60 15 27 H 0.13 2.95 5.99 -52.49 -0.31 2.63 15 LS Contribution 261.74 15.07 3.94 3.94 Total: -1.00 -26.39 261.74 -9.57 -35.96 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -0.99 Total: 3.71 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -2.84 Total: -33.20 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.65 Total: -18.63 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.10 Total: 15.24 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -5.24 Total: -7.03 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.39 -9.57 -35.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307729704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.736 kcal (2) G-P(sol) polarization free energy of solvation -26.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds