Wall clock time and date at job start Mon Mar 30 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38653 * 119.88255 * 2 1 4 4 C 1.37662 * 120.12512 * 179.48844 * 3 2 1 5 5 C 1.39788 * 120.48965 * 0.86041 * 4 3 2 6 6 S 1.75879 * 129.68364 * 179.09005 * 5 4 3 7 7 C 1.75181 * 92.77381 * 179.97438 * 6 5 4 8 8 S 1.76195 * 124.58795 * 179.97438 * 7 6 5 9 9 C 1.37814 * 110.81938 * 0.02562 * 7 6 5 10 10 C 1.40593 * 123.26561 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99684 * 322.85789 * 10 9 7 12 12 C 1.39470 * 120.00428 * 142.85738 * 10 9 7 13 13 N 1.31331 * 119.99907 * 336.03317 * 12 10 9 14 14 Si 1.86804 * 120.00250 * 155.75779 * 12 10 9 15 15 H 1.48504 * 109.46957 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47532 * 120.00093 * 14 12 10 17 17 H 1.48500 * 109.46970 * 240.00334 * 14 12 10 18 18 C 1.39323 * 119.63987 * 359.37695 * 5 4 3 19 19 C 1.37346 * 119.88270 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47295 * 269.97248 * 1 2 3 21 21 H 1.09003 * 109.47570 * 29.97340 * 1 2 3 22 22 H 1.09004 * 109.46916 * 149.97247 * 1 2 3 23 23 H 1.08000 * 119.93639 * 0.02562 * 3 2 1 24 24 H 1.08004 * 119.75369 * 179.97438 * 4 3 2 25 25 H 1.41002 * 100.00396 * 266.24447 * 8 7 6 26 26 H 0.96994 * 119.99949 * 354.57421 * 13 12 10 27 27 H 1.07998 * 119.78255 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.2022 0.0000 4 6 3.5743 1.2080 0.0106 5 6 4.2887 0.0066 0.0034 6 16 6.0261 -0.2669 -0.0076 7 6 5.8377 -2.0086 -0.0100 8 16 7.1723 -3.1589 -0.0210 9 6 4.5044 -2.3571 -0.0032 10 6 4.0556 -3.6894 -0.0028 11 1 4.5867 -4.4383 -0.5716 12 6 2.9245 -4.0441 0.7322 13 7 2.5549 -3.3160 1.7607 14 14 1.9310 -5.5504 0.2488 15 1 2.5485 -6.1899 -0.9407 16 1 1.9141 -6.5154 1.3774 17 1 0.5402 -5.1430 -0.0749 18 6 3.6001 -1.2046 -0.0015 19 6 2.1912 -1.1909 -0.0005 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 1.6548 2.1358 0.0004 24 1 4.1063 2.1480 0.0101 25 1 7.2895 -3.3849 -1.4079 26 1 3.1106 -2.5786 2.0577 27 1 1.6458 -2.1230 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307729704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:32 Heat of formation + Delta-G solvation = 4.120741 kcal Electronic energy + Delta-G solvation = -13705.514175 eV Core-core repulsion = 11451.103746 eV Total energy + Delta-G solvation = -2254.410429 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46475 -37.11082 -34.60908 -32.67657 -30.56933 -28.16369 -27.06109 -23.92577 -23.00873 -21.35771 -19.55047 -18.45425 -17.52643 -16.39412 -16.34742 -15.81213 -15.45217 -15.07976 -14.74148 -14.61985 -14.25476 -13.48164 -13.45453 -13.02899 -12.80014 -12.55563 -12.33939 -12.20273 -12.01161 -11.54312 -11.40839 -11.19915 -10.76629 -10.26567 -9.49329 -9.11944 -8.76297 -8.49489 -6.59147 -0.12618 0.37966 0.84325 1.14239 1.42103 1.48228 1.64083 1.77433 1.80491 2.10071 2.27368 2.70332 3.07036 3.93484 4.03769 4.13148 4.44637 4.54449 4.76777 4.81981 4.88048 5.12707 5.22036 5.26618 5.38683 5.43017 5.67205 5.79773 5.89564 6.10654 6.38675 6.67528 7.88245 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.014388 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.518398 B = 1945.648954 C = 3688.944704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.112 4.112 3 C -0.094 4.094 4 C -0.109 4.109 5 C -0.133 4.133 6 S 0.014 5.986 7 C -0.418 4.418 8 S -0.078 6.078 9 C 0.113 3.887 10 C -0.498 4.498 11 H 0.077 0.923 12 C 0.012 3.988 13 N -0.786 5.786 14 Si 1.112 2.888 15 H -0.268 1.268 16 H -0.264 1.264 17 H -0.255 1.255 18 C -0.102 4.102 19 C -0.078 4.078 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.166 0.834 24 H 0.144 0.856 25 H 0.036 0.964 26 H 0.280 0.720 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 4.934 -2.623 7.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.133 4.133 5 C -0.250 4.250 6 S 0.271 5.729 7 C -0.645 4.645 8 S 0.077 5.923 9 C 0.101 3.899 10 C -0.528 4.528 11 H 0.095 0.905 12 C -0.207 4.207 13 N -0.407 5.407 14 Si 0.929 3.071 15 H -0.193 1.193 16 H -0.189 1.189 17 H -0.179 1.179 18 C -0.112 4.112 19 C -0.098 4.098 20 H 0.093 0.907 21 H 0.111 0.889 22 H 0.080 0.920 23 H 0.183 0.817 24 H 0.161 0.839 25 H 0.002 0.998 26 H 0.091 0.909 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.914 4.361 -1.977 6.861 hybrid contribution 0.188 0.368 -1.214 1.282 sum -4.726 4.729 -3.191 7.408 Atomic orbital electron populations 1.20740 0.88523 1.03563 1.02916 1.20100 0.97927 0.92221 1.01264 1.21260 0.92777 0.98500 0.98891 1.20815 0.94646 0.95205 1.02615 1.22903 0.97841 0.97468 1.06772 1.82768 1.01665 1.03367 1.85118 1.24175 0.97272 0.95802 1.47206 1.85411 1.40358 1.56811 1.09766 1.18321 0.89704 0.93412 0.88474 1.20272 1.11601 0.93794 1.27176 0.90454 1.28355 0.95723 1.04940 0.91688 1.70699 1.38099 1.14162 1.17762 0.83061 0.75596 0.71125 0.77331 1.19250 1.18893 1.17937 1.19735 0.94635 0.92410 1.04405 1.21217 0.91638 0.98842 0.98054 0.90717 0.88949 0.92017 0.81656 0.83874 0.99806 0.90855 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 10.00 71.23 0.71 -1.87 15 2 C -0.11 -3.89 5.86 -19.98 -0.12 -4.01 15 3 C -0.09 -2.91 9.69 22.23 0.22 -2.70 15 4 C -0.11 -3.89 10.06 22.51 0.23 -3.67 15 5 C -0.13 -5.98 6.41 22.91 0.15 -5.83 15 6 S 0.01 0.63 23.18 -56.49 -1.31 -0.68 15 7 C -0.42 -21.63 6.80 67.72 0.46 -21.17 15 8 S -0.08 -3.65 25.53 -56.49 -1.44 -5.09 15 9 C 0.11 6.02 5.01 -20.65 -0.10 5.91 15 10 C -0.50 -26.20 8.46 23.14 0.20 -26.01 15 11 H 0.08 4.13 7.86 -2.91 -0.02 4.10 15 12 C 0.01 0.56 3.86 85.06 0.33 0.89 15 13 N -0.79 -39.81 11.67 21.77 0.25 -39.56 15 14 Si 1.11 40.87 29.99 68.60 2.06 42.93 15 15 H -0.27 -9.49 7.11 99.48 0.71 -8.79 15 16 H -0.26 -9.29 7.11 99.48 0.71 -8.59 15 17 H -0.26 -8.66 7.11 99.48 0.71 -7.96 15 18 C -0.10 -4.99 5.08 -20.21 -0.10 -5.10 15 19 C -0.08 -3.42 8.01 22.71 0.18 -3.24 15 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.09 1.77 8.08 -2.39 -0.02 1.75 15 22 H 0.06 1.60 8.08 -2.39 -0.02 1.58 15 23 H 0.17 3.54 8.06 -2.91 -0.02 3.51 15 24 H 0.14 4.20 8.06 -2.91 -0.02 4.17 15 25 H 0.04 1.64 9.55 73.80 0.70 2.35 15 26 H 0.28 15.32 6.98 -92.71 -0.65 14.67 15 27 H 0.12 5.29 5.99 -2.91 -0.02 5.28 15 Total: -1.00 -59.05 261.74 3.74 -55.32 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 2.03 Total: 13.88 kcal Atomic # 6 Polarization: -68.93 SS G_CDS: 2.14 Total: -66.79 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.25 Total: -39.56 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.06 Total: 42.93 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.75 Total: -5.77 kcal Total: -59.05 3.74 -55.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307729704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.438 kcal (2) G-P(sol) polarization free energy of solvation -59.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds