Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47028 * 240.00615 * 3 2 1 5 5 H 1.48497 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47256 * 120.00258 * 3 2 1 7 7 C 1.38766 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99239 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99808 * 179.97438 * 9 7 2 11 11 C 1.39594 * 120.16453 * 179.97438 * 10 9 7 12 12 C 1.38568 * 117.90317 * 180.02562 * 11 10 9 13 13 C 1.38835 * 118.04782 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.98038 * 179.97438 * 13 12 11 15 15 F 1.39898 * 109.47112 * 90.00085 * 14 13 12 16 16 F 1.39901 * 109.47199 * 210.00358 * 14 13 12 17 17 F 1.39909 * 109.47070 * 330.00049 * 14 13 12 18 18 N 1.31875 * 120.03492 * 0.02562 * 13 12 11 19 19 N 1.28342 * 122.28807 * 359.97438 * 18 13 12 20 20 H 0.97001 * 120.00165 * 359.97438 * 1 2 3 21 21 H 1.07992 * 121.05036 * 0.04979 * 11 10 9 22 22 H 1.07998 * 120.97273 * 180.27611 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1035 1.6964 -1.2126 5 1 1.2849 2.7464 0.0006 6 1 3.1037 1.6964 1.2124 7 6 2.0097 -1.2018 -0.0005 8 1 3.0897 -1.2017 -0.0010 9 16 1.1287 -2.7276 -0.0005 10 6 2.4785 -3.8602 -0.0021 11 6 2.2400 -5.2357 -0.0020 12 6 3.3358 -6.0838 -0.0027 13 6 4.6020 -5.5144 -0.0040 14 6 5.8242 -6.3960 -0.0042 15 9 6.2014 -6.6698 -1.3233 16 9 6.8711 -5.7420 0.6541 17 9 5.5345 -7.5948 0.6564 18 7 4.7358 -4.2024 -0.0040 19 7 3.7259 -3.4103 -0.0034 20 1 -0.4850 0.8400 0.0004 21 1 1.2333 -5.6264 -0.0018 22 1 3.2086 -7.1562 -0.0071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335762810.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = -121.873345 kcal Electronic energy + Delta-G solvation = -15400.360357 eV Core-core repulsion = 12052.336460 eV Total energy + Delta-G solvation = -3348.023898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.008 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.21732 -48.73260 -48.69129 -41.83244 -34.87060 -34.40078 -34.01243 -28.45413 -27.59543 -25.81629 -24.28401 -20.22731 -19.93788 -19.62420 -19.59792 -18.35225 -17.91905 -17.03008 -16.13326 -15.61323 -15.55405 -15.46649 -15.32923 -15.12448 -14.85421 -14.84292 -14.44094 -13.90383 -13.43896 -13.05915 -13.01513 -12.27338 -12.09425 -11.75786 -11.36207 -11.22128 -11.16554 -10.64398 -8.99499 -8.60930 -6.39356 -0.49905 -0.17623 0.93141 1.33972 1.39108 1.43174 1.49772 2.05678 2.21646 2.46986 2.81362 2.83219 2.93861 3.32465 3.60681 3.64615 3.83758 3.93987 4.47289 4.82200 5.02093 5.41813 6.18134 6.88387 7.53867 8.46907 Molecular weight = 250.01amu Principal moments of inertia in cm(-1) A = 0.040354 B = 0.005802 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.690438 B = 4824.543903 C = 5343.733279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.575 4.575 8 H 0.095 0.905 9 S 0.141 5.859 10 C 0.034 3.966 11 C -0.112 4.112 12 C -0.048 4.048 13 C -0.087 4.087 14 C 0.547 3.453 15 F -0.172 7.172 16 F -0.174 7.174 17 F -0.159 7.159 18 N -0.213 5.213 19 N -0.286 5.286 20 H 0.283 0.717 21 H 0.194 0.806 22 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -12.950 0.023 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.172 4.172 3 Si 0.813 3.187 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.722 4.722 8 H 0.113 0.887 9 S 0.391 5.609 10 C -0.219 4.219 11 C -0.148 4.148 12 C -0.078 4.078 13 C -0.242 4.242 14 C 0.491 3.509 15 F -0.153 7.153 16 F -0.156 7.156 17 F -0.141 7.141 18 N -0.058 5.058 19 N -0.138 5.138 20 H 0.093 0.907 21 H 0.211 0.789 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.022 -11.511 0.023 12.193 hybrid contribution 1.023 0.055 -0.007 1.024 sum 5.045 -11.455 0.016 12.517 Atomic orbital electron populations 1.69972 1.07233 1.30019 1.45743 1.25982 0.95991 1.02979 0.92296 0.85092 0.78161 0.76029 0.79440 1.19255 1.19025 1.19265 1.23627 0.97451 0.91839 1.59314 0.88673 1.83243 1.01628 0.96440 1.79554 1.26106 0.99908 0.99708 0.96150 1.22372 1.02815 0.90055 0.99587 1.22288 0.89452 1.03861 0.92205 1.22640 0.95138 0.94266 1.12169 1.17286 0.81712 0.77948 0.73994 1.93224 1.92117 1.94016 1.35956 1.93208 1.60047 1.81224 1.81100 1.93214 1.93287 1.46721 1.80830 1.72577 1.25976 1.02568 1.04697 1.73738 0.96287 1.27205 1.16530 0.90735 0.78933 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.31 13.22 21.64 0.29 -48.03 14 2 C 0.03 1.85 5.49 84.85 0.47 2.31 14 3 Si 0.99 42.32 29.55 68.60 2.03 44.35 14 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 14 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 14 7 C -0.57 -31.30 9.26 67.95 0.63 -30.67 14 8 H 0.10 5.39 6.56 -2.91 -0.02 5.37 14 9 S 0.14 6.64 21.66 -56.49 -1.22 5.41 14 10 C 0.03 1.39 7.04 84.90 0.60 1.99 14 11 C -0.11 -3.33 9.97 22.68 0.23 -3.10 14 12 C -0.05 -1.23 9.52 22.49 0.21 -1.02 14 13 C -0.09 -2.80 6.38 42.69 0.27 -2.52 14 14 C 0.55 14.98 3.44 71.24 0.25 15.22 14 15 F -0.17 -4.63 17.30 44.97 0.78 -3.86 14 16 F -0.17 -5.32 17.05 44.97 0.77 -4.55 14 17 F -0.16 -3.56 16.51 44.97 0.74 -2.82 14 18 N -0.21 -8.87 11.12 -47.52 -0.53 -9.39 14 19 N -0.29 -13.29 9.64 -54.21 -0.52 -13.81 14 20 H 0.28 14.16 8.31 -92.71 -0.77 13.39 14 21 H 0.19 4.11 8.06 -2.91 -0.02 4.08 14 22 H 0.20 3.02 7.67 -2.91 -0.02 2.99 14 Total: -1.00 -62.04 239.08 6.26 -55.78 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: 1.29 Total: -5.30 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 2.65 Total: -17.79 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -0.77 Total: -71.23 kcal Atomic # 9 Polarization: -13.52 SS G_CDS: 2.29 Total: -11.23 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.22 Total: 5.41 kcal Total: -62.04 6.26 -55.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335762810.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.093 kcal (2) G-P(sol) polarization free energy of solvation -62.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds