Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29446 * 117.95844 * 2 1 4 4 C 1.50063 * 124.07491 * 179.55524 * 3 2 1 5 5 H 1.09003 * 109.24982 * 256.99966 * 4 3 2 6 6 C 1.52996 * 109.36000 * 137.34193 * 4 3 2 7 7 C 1.53026 * 110.14641 * 17.13662 * 4 3 2 8 8 C 1.53392 * 108.43656 * 310.56155 * 7 4 3 9 9 H 1.09002 * 109.64487 * 307.54068 * 8 7 4 10 10 C 1.52999 * 109.64250 * 187.11896 * 8 7 4 11 11 N 1.46501 * 109.47223 * 175.00164 * 10 8 7 12 12 C 1.36934 * 119.99911 * 90.00453 * 11 10 8 13 13 H 1.08009 * 119.99693 * 216.33010 * 12 11 10 14 14 C 1.38802 * 120.00308 * 36.32708 * 12 11 10 15 15 N 1.31624 * 120.00076 * 20.84767 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 200.84693 * 14 12 11 17 17 H 1.48502 * 109.47160 * 180.02562 * 16 14 12 18 18 H 1.48494 * 109.47331 * 299.99804 * 16 14 12 19 19 H 1.48503 * 109.47146 * 60.00369 * 16 14 12 20 20 C 1.46505 * 120.00023 * 269.99904 * 11 10 8 21 21 C 1.52994 * 117.49722 * 193.76500 * 20 11 10 22 22 C 1.53003 * 117.49664 * 125.10553 * 20 11 10 23 23 C 1.50065 * 117.96308 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47732 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47115 * 119.99888 * 1 2 3 26 26 H 1.09007 * 109.46843 * 239.99232 * 1 2 3 27 27 H 1.08000 * 117.96070 * 359.58619 * 3 2 1 28 28 H 1.09001 * 109.47004 * 299.31097 * 6 4 3 29 29 H 1.09000 * 109.46775 * 59.31204 * 6 4 3 30 30 H 1.09004 * 109.47094 * 179.31038 * 6 4 3 31 31 H 1.09001 * 109.64076 * 190.88431 * 7 4 3 32 32 H 1.08997 * 109.81727 * 70.35034 * 7 4 3 33 33 H 1.09007 * 109.47226 * 55.00453 * 10 8 7 34 34 H 1.09001 * 109.47226 * 295.00178 * 10 8 7 35 35 H 0.97000 * 119.99789 * 174.59772 * 15 14 12 36 36 H 1.08997 * 115.54918 * 339.44262 * 20 11 10 37 37 H 1.08995 * 117.50178 * 0.02562 * 21 20 11 38 38 H 1.09007 * 117.49403 * 145.02296 * 21 20 11 39 39 H 1.08999 * 117.50007 * 214.98135 * 22 20 11 40 40 H 1.08997 * 117.49884 * 359.97438 * 22 20 11 41 41 H 1.08993 * 109.36037 * 76.89652 * 23 2 1 42 42 H 1.09001 * 109.35706 * 317.31071 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 0.0096 5 1 3.9317 1.5754 1.0136 6 6 4.0039 2.4093 -0.9698 7 6 4.2792 -0.0071 -0.4043 8 6 3.6706 -1.1473 0.4219 9 1 3.7207 -0.8988 1.4821 10 6 4.4434 -2.4415 0.1600 11 7 3.9368 -3.4990 1.0383 12 6 2.9069 -4.2997 0.6222 13 1 2.1624 -4.6334 1.3300 14 6 2.8195 -4.6824 -0.7092 15 7 3.8880 -4.6432 -1.4767 16 14 1.1854 -5.2532 -1.4117 17 1 1.3579 -5.6038 -2.8444 18 1 0.7148 -6.4466 -0.6638 19 1 0.1846 -4.1634 -1.2853 20 6 4.5323 -3.7000 2.3617 21 6 4.1963 -4.9985 3.0977 22 6 3.5941 -3.6728 3.5700 23 6 2.2107 -1.3254 -0.0006 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5140 0.8900 27 1 1.5087 2.0379 -0.0069 28 1 3.6833 2.1367 -1.9753 29 1 3.5253 3.3436 -0.6766 30 1 5.0865 2.5353 -0.9552 31 1 5.3501 0.0542 -0.2110 32 1 4.1082 -0.1914 -1.4649 33 1 5.5025 -2.2792 0.3603 34 1 4.3118 -2.7391 -0.8803 35 1 3.8462 -4.9839 -2.3840 36 1 5.5343 -3.2916 2.4933 37 1 3.5326 -5.7034 2.5972 38 1 4.9772 -5.4442 3.7139 39 1 3.9790 -3.2469 4.4966 40 1 2.5339 -3.5050 3.3803 41 1 2.1742 -1.7535 -1.0023 42 1 1.7124 -1.9993 0.6964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356056796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = 36.025777 kcal Electronic energy + Delta-G solvation = -19341.938640 eV Core-core repulsion = 16708.623920 eV Total energy + Delta-G solvation = -2633.314720 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -38.72699 -36.82555 -33.83389 -33.08168 -31.83826 -29.67683 -26.54585 -26.02867 -25.37523 -23.31476 -21.32207 -20.77371 -20.07632 -19.50454 -17.13464 -16.15936 -15.39771 -15.01083 -14.41655 -14.05650 -13.81995 -13.56552 -13.45743 -12.84048 -12.56941 -12.18367 -11.96559 -11.93482 -11.77724 -11.34652 -11.07080 -11.02152 -10.97206 -10.79302 -10.56849 -10.53789 -10.39644 -10.03884 -9.80705 -9.68826 -9.49459 -9.28003 -9.14294 -8.38452 -8.21420 -6.41458 -5.78557 -3.32900 2.75685 3.34359 3.40809 3.42991 4.43725 4.99701 5.06698 5.20529 5.24901 5.38802 5.47883 5.56257 5.68241 5.80931 5.86443 5.95568 5.96318 6.05729 6.10785 6.17067 6.18051 6.23561 6.29244 6.31990 6.43606 6.48963 6.52605 6.64828 6.67441 6.69331 6.87799 6.95744 7.01756 7.15331 7.21774 7.25737 7.30069 7.61898 7.76793 7.85600 8.53975 9.20180 9.83395 10.40133 11.21458 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.008846 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.038014 B = 3164.548792 C = 3799.959340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.176 4.176 4 C -0.055 4.055 5 H 0.068 0.932 6 C -0.140 4.140 7 C -0.107 4.107 8 C -0.097 4.097 9 H 0.053 0.947 10 C 0.151 3.849 11 N -0.549 5.549 12 C -0.252 4.252 13 H 0.060 0.940 14 C 0.018 3.982 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.290 1.290 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.130 3.870 21 C -0.199 4.199 22 C -0.228 4.228 23 C -0.062 4.062 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 9.628 2.537 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.073 4.073 5 H 0.087 0.913 6 C -0.197 4.197 7 C -0.146 4.146 8 C -0.118 4.118 9 H 0.072 0.928 10 C 0.025 3.975 11 N -0.264 5.264 12 C -0.382 4.382 13 H 0.077 0.923 14 C -0.182 4.182 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.216 1.216 18 H -0.208 1.208 19 H -0.205 1.205 20 C 0.020 3.980 21 C -0.238 4.238 22 C -0.269 4.269 23 C -0.099 4.099 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.119 9.637 2.264 9.963 hybrid contribution -1.010 -0.360 -0.285 1.109 sum -2.129 9.277 1.980 9.722 Atomic orbital electron populations 1.20965 0.93600 1.01132 1.02033 1.21303 0.95255 0.96379 0.98099 1.21767 0.95515 0.96432 1.05715 1.19932 0.92956 0.95696 0.98736 0.91347 1.21784 1.00608 0.97799 0.99522 1.21675 0.98700 0.93865 1.00317 1.21788 0.95527 0.96382 0.98094 0.92802 1.21085 0.92631 0.84737 0.99076 1.43407 1.37876 1.33369 1.11774 1.18819 1.00718 1.25980 0.92677 0.92260 1.25101 0.96453 0.98490 0.98195 1.69855 1.26765 1.47484 1.09005 0.86567 0.84487 0.78921 0.78106 1.21599 1.20803 1.20534 1.21101 0.93685 0.97917 0.85309 1.23072 1.03820 0.92203 1.04720 1.23356 1.00640 1.02686 1.00260 1.20298 0.94987 0.92260 1.02377 0.92986 0.92020 0.91889 0.89179 0.92836 0.93355 0.92948 0.92606 0.92175 0.95900 0.88113 0.93333 0.89692 0.88434 0.91018 0.91160 0.89847 0.91289 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.98 36.01 0.36 -1.45 16 2 C -0.11 -1.90 5.84 -100.94 -0.59 -2.49 16 3 C -0.18 -2.76 8.64 -35.90 -0.31 -3.07 16 4 C -0.05 -0.82 2.97 -92.07 -0.27 -1.09 16 5 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 6 C -0.14 -1.75 9.14 37.16 0.34 -1.41 16 7 C -0.11 -1.81 4.60 -26.51 -0.12 -1.93 16 8 C -0.10 -1.90 2.45 -90.40 -0.22 -2.12 16 9 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 10 C 0.15 3.41 4.83 -4.04 -0.02 3.39 16 11 N -0.55 -13.14 2.71 -165.66 -0.45 -13.59 16 12 C -0.25 -6.53 6.41 -15.06 -0.10 -6.62 16 13 H 0.06 1.57 7.16 -52.48 -0.38 1.20 16 14 C 0.02 0.47 4.98 -17.43 -0.09 0.38 16 15 N -0.89 -24.65 11.34 55.49 0.63 -24.02 16 16 Si 0.89 21.05 29.61 -169.99 -5.03 16.02 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.13 2.79 6.61 -67.93 -0.45 2.34 16 21 C -0.20 -4.03 9.80 -26.70 -0.26 -4.30 16 22 C -0.23 -4.44 10.09 -26.69 -0.27 -4.70 16 23 C -0.06 -1.25 4.38 -28.18 -0.12 -1.38 16 24 H 0.05 0.67 7.56 -51.93 -0.39 0.28 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.27 7.56 -52.49 -0.40 0.87 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 34 H 0.10 2.58 5.35 -51.93 -0.28 2.30 16 35 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 37 H 0.10 2.18 6.91 -51.93 -0.36 1.82 16 38 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.73 8.03 -51.93 -0.42 1.31 16 41 H 0.07 1.54 8.06 -51.93 -0.42 1.12 16 42 H 0.08 1.81 7.11 -51.93 -0.37 1.44 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -26.51 327.41 -9.67 -36.18 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.63 Total: 4.93 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.12 Total: -24.44 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.18 Total: -37.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.51 -9.67 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356056796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.203 kcal (2) G-P(sol) polarization free energy of solvation -26.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds