Wall clock time and date at job start Mon Mar 30 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29443 * 117.96642 * 2 1 4 4 C 1.50062 * 124.07695 * 180.47093 * 3 2 1 5 5 H 1.09004 * 109.35820 * 222.81947 * 4 3 2 6 6 C 1.52999 * 109.35868 * 103.09916 * 4 3 2 7 7 C 1.53021 * 110.14684 * 342.88804 * 4 3 2 8 8 C 1.53404 * 108.43888 * 49.43703 * 7 4 3 9 9 H 1.09005 * 109.65664 * 52.23855 * 8 7 4 10 10 C 1.53001 * 109.63842 * 172.87594 * 8 7 4 11 11 N 1.46507 * 109.46801 * 183.92592 * 10 8 7 12 12 C 1.36934 * 119.99744 * 89.99927 * 11 10 8 13 13 H 1.08001 * 120.00277 * 217.38716 * 12 11 10 14 14 C 1.38817 * 119.99870 * 37.39497 * 12 11 10 15 15 N 1.31615 * 120.00040 * 22.56575 * 14 12 11 16 16 Si 1.86803 * 119.99727 * 202.56643 * 14 12 11 17 17 H 1.48501 * 109.46957 * 59.99952 * 16 14 12 18 18 H 1.48503 * 109.47229 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47222 * 300.00209 * 16 14 12 20 20 C 1.46496 * 119.99983 * 270.00071 * 11 10 8 21 21 C 1.53002 * 117.49649 * 193.46381 * 20 11 10 22 22 C 1.53000 * 117.49842 * 124.80129 * 20 11 10 23 23 C 1.50073 * 117.96060 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47356 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47824 * 119.99750 * 1 2 3 26 26 H 1.09000 * 109.47788 * 240.00128 * 1 2 3 27 27 H 1.07999 * 117.95856 * 0.48842 * 3 2 1 28 28 H 1.08997 * 109.47308 * 59.99837 * 6 4 3 29 29 H 1.08997 * 109.47410 * 299.99660 * 6 4 3 30 30 H 1.09003 * 109.47152 * 179.97438 * 6 4 3 31 31 H 1.09008 * 109.64283 * 169.12144 * 7 4 3 32 32 H 1.09001 * 109.64369 * 289.75220 * 7 4 3 33 33 H 1.08994 * 109.46836 * 303.92397 * 10 8 7 34 34 H 1.09001 * 109.47013 * 63.92937 * 10 8 7 35 35 H 0.97002 * 119.99425 * 174.95798 * 15 14 12 36 36 H 1.09007 * 115.55166 * 339.12918 * 20 11 10 37 37 H 1.08995 * 117.49926 * 359.97438 * 21 20 11 38 38 H 1.09004 * 117.49914 * 145.02360 * 21 20 11 39 39 H 1.08997 * 117.50072 * 214.97229 * 22 20 11 40 40 H 1.09005 * 117.50074 * 359.97438 * 22 20 11 41 41 H 1.08998 * 109.35494 * 283.05200 * 23 2 1 42 42 H 1.09002 * 109.35945 * 42.77714 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3030 -0.0102 5 1 3.8901 2.0888 0.6898 6 6 4.0653 1.6877 -1.4180 7 6 4.2792 -0.0077 0.4026 8 6 3.6701 -1.1473 -0.4241 9 1 3.7161 -0.8967 -1.4840 10 6 4.4431 -2.4417 -0.1634 11 7 3.9189 -3.5053 -1.0239 12 6 4.4545 -3.7057 -2.2681 13 1 3.8148 -3.9810 -3.0935 14 6 5.8199 -3.5552 -2.4684 15 7 6.6499 -3.6629 -1.4526 16 14 6.4792 -3.1998 -4.1796 17 1 5.9009 -1.9261 -4.6782 18 1 7.9587 -3.0835 -4.1259 19 1 6.1021 -4.3065 -5.0952 20 6 2.8217 -4.3542 -0.5533 21 6 2.5273 -5.6308 -1.3436 22 6 1.5694 -4.4398 -1.4281 23 6 2.2106 -1.3255 -0.0006 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3635 -0.5138 -0.8900 26 1 -0.3635 -0.5138 0.8900 27 1 1.5089 2.0378 0.0081 28 1 3.5962 2.6276 -1.7091 29 1 3.7779 0.9054 -2.1205 30 1 5.1489 1.8047 -1.4274 31 1 5.3502 0.0536 0.2089 32 1 4.1055 -0.1908 1.4629 33 1 5.4992 -2.2846 -0.3824 34 1 4.3275 -2.7297 0.8815 35 1 7.6076 -3.6308 -1.6033 36 1 2.6839 -4.3884 0.5275 37 1 3.1497 -5.8388 -2.2138 38 1 2.1954 -6.5047 -0.7828 39 1 0.6078 -4.5306 -0.9230 40 1 1.5617 -3.8640 -2.3537 41 1 2.1748 -1.7540 1.0010 42 1 1.7133 -1.9983 -0.6993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356056799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:07 Heat of formation + Delta-G solvation = 25.603335 kcal Electronic energy + Delta-G solvation = -19413.812320 eV Core-core repulsion = 16780.045649 eV Total energy + Delta-G solvation = -2633.766671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30699 -38.49525 -35.47838 -34.26088 -33.62354 -31.37319 -27.74619 -27.41075 -27.10808 -25.32131 -22.98873 -22.31744 -21.66006 -21.22286 -18.35353 -17.93303 -17.13481 -16.39589 -16.22586 -15.69771 -15.49960 -14.92206 -14.66523 -14.42081 -14.04025 -13.67150 -13.55527 -13.39871 -13.15038 -13.10783 -12.76504 -12.68287 -12.43684 -12.37060 -12.18439 -12.13754 -12.00841 -11.77791 -11.44670 -11.12358 -11.01254 -10.86247 -10.79468 -10.36703 -9.52724 -8.37832 -7.80797 -5.40185 1.41527 1.45024 1.47897 1.50723 2.46963 3.16055 3.46215 3.53902 3.86873 3.97303 4.11383 4.32066 4.32427 4.45326 4.47195 4.52180 4.64144 4.65317 4.73269 4.80145 4.86251 4.94218 4.96311 4.96577 5.01085 5.05656 5.08339 5.09624 5.23601 5.27457 5.36353 5.38786 5.44601 5.52872 5.57154 5.68889 5.74456 5.85655 5.96204 6.28156 6.49422 7.18882 7.90635 8.41372 9.13421 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.009148 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.794549 B = 3060.056016 C = 4025.292242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.163 4.163 4 C -0.055 4.055 5 H 0.088 0.912 6 C -0.138 4.138 7 C -0.106 4.106 8 C -0.090 4.090 9 H 0.041 0.959 10 C 0.160 3.840 11 N -0.563 5.563 12 C -0.258 4.258 13 H 0.049 0.951 14 C -0.029 4.029 15 N -0.915 5.915 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.277 1.277 20 C 0.112 3.888 21 C -0.202 4.202 22 C -0.200 4.200 23 C -0.064 4.064 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 8.364 4.212 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.131 4.131 3 C -0.181 4.181 4 C -0.073 4.073 5 H 0.106 0.894 6 C -0.196 4.196 7 C -0.144 4.144 8 C -0.111 4.111 9 H 0.059 0.941 10 C 0.034 3.966 11 N -0.280 5.280 12 C -0.388 4.388 13 H 0.066 0.934 14 C -0.227 4.227 15 N -0.559 5.559 16 Si 0.777 3.223 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.203 1.203 20 C 0.003 3.997 21 C -0.241 4.241 22 C -0.241 4.241 23 C -0.101 4.101 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.426 8.446 4.239 13.347 hybrid contribution 0.791 -0.260 -1.121 1.397 sum -8.635 8.186 3.118 12.300 Atomic orbital electron populations 1.20930 0.91353 1.02706 1.02123 1.21195 0.96694 0.94968 1.00210 1.21991 0.95555 0.97254 1.03255 1.19974 0.92856 0.97144 0.97366 0.89383 1.21773 1.00710 1.00964 0.96114 1.21629 0.98831 0.94595 0.99339 1.21591 0.95420 0.95703 0.98347 0.94059 1.20878 0.98407 0.86300 0.91009 1.43512 1.36932 1.32359 1.15179 1.18924 0.89653 1.43714 0.86538 0.93359 1.25740 0.96692 1.00654 0.99575 1.70043 1.01934 1.52526 1.31396 0.85644 0.76820 0.78540 0.81332 1.20718 1.21656 1.20295 1.21286 0.90396 0.94090 0.93917 1.23103 1.04105 0.92913 1.03988 1.23276 0.95499 1.02175 1.03110 1.20281 0.94556 0.94665 1.00580 0.91047 0.92171 0.91221 0.86616 0.91288 0.94655 0.92877 0.93241 0.91882 0.92268 0.95752 0.93813 0.88335 0.91287 0.88224 0.87749 0.91587 0.92047 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 9.98 71.23 0.71 -1.88 16 2 C -0.13 -3.73 5.84 -15.10 -0.09 -3.82 16 3 C -0.16 -4.35 8.64 27.04 0.23 -4.11 16 4 C -0.06 -1.54 3.12 -11.73 -0.04 -1.57 16 5 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 6 C -0.14 -3.94 8.97 71.98 0.65 -3.29 16 7 C -0.11 -3.53 4.74 30.74 0.15 -3.39 16 8 C -0.09 -3.53 2.41 -10.65 -0.03 -3.56 16 9 H 0.04 1.86 6.44 -2.38 -0.02 1.85 16 10 C 0.16 7.44 4.82 86.38 0.42 7.86 16 11 N -0.56 -27.68 2.64 -678.01 -1.79 -29.47 16 12 C -0.26 -14.06 8.06 84.04 0.68 -13.39 16 13 H 0.05 2.70 7.23 -2.91 -0.02 2.68 16 14 C -0.03 -1.61 4.92 84.86 0.42 -1.19 16 15 N -0.92 -53.34 11.53 21.65 0.25 -53.09 16 16 Si 0.95 45.09 29.61 68.60 2.03 47.12 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C 0.11 4.68 5.29 44.99 0.24 4.91 16 21 C -0.20 -8.01 9.81 30.62 0.30 -7.71 16 22 C -0.20 -7.31 8.89 30.62 0.27 -7.04 16 23 C -0.06 -2.17 4.35 29.66 0.13 -2.04 16 24 H 0.07 1.35 7.56 -2.38 -0.02 1.33 16 25 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.12 2.57 7.56 -2.91 -0.02 2.55 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.03 1.18 6.58 -2.39 -0.02 1.16 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 32 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 33 H 0.06 3.20 5.55 -2.39 -0.01 3.19 16 34 H 0.02 1.09 8.01 -2.39 -0.02 1.07 16 35 H 0.25 14.30 8.32 -92.71 -0.77 13.52 16 36 H 0.10 3.80 8.10 -2.38 -0.02 3.78 16 37 H 0.07 3.14 6.92 -2.39 -0.02 3.12 16 38 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 39 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.07 2.66 8.05 -2.38 -0.02 2.64 16 41 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 42 H 0.07 2.40 6.09 -2.39 -0.01 2.39 16 Total: -1.00 -59.45 322.65 5.49 -53.97 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.96 Total: 21.69 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 4.04 Total: -40.21 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.54 Total: -82.56 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -59.45 5.49 -53.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356056799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.569 kcal (2) G-P(sol) polarization free energy of solvation -59.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds