Wall clock time and date at job start Mon Mar 30 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29443 * 117.96084 * 2 1 4 4 C 1.50068 * 124.07164 * 179.50731 * 3 2 1 5 5 H 1.09008 * 109.35211 * 137.34088 * 4 3 2 6 6 C 1.52997 * 109.35851 * 256.92335 * 4 3 2 7 7 C 1.53018 * 110.14914 * 17.13238 * 4 3 2 8 8 C 1.53383 * 108.44014 * 310.56316 * 7 4 3 9 9 H 1.08999 * 109.64652 * 307.75247 * 8 7 4 10 10 C 1.53004 * 109.81951 * 187.22289 * 8 7 4 11 11 N 1.46503 * 109.47320 * 175.94982 * 10 8 7 12 12 C 1.36935 * 120.00110 * 89.99649 * 11 10 8 13 13 H 1.08002 * 120.00397 * 218.00734 * 12 11 10 14 14 C 1.38819 * 119.99687 * 38.00568 * 12 11 10 15 15 N 1.31611 * 120.00103 * 20.37185 * 14 12 11 16 16 Si 1.86806 * 119.99641 * 200.36814 * 14 12 11 17 17 H 1.48493 * 109.47229 * 60.00443 * 16 14 12 18 18 H 1.48504 * 109.46740 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47097 * 300.00172 * 16 14 12 20 20 C 1.46498 * 119.99797 * 270.00071 * 11 10 8 21 21 C 1.53006 * 117.49663 * 194.23817 * 20 11 10 22 22 C 1.53004 * 60.00038 * 252.50921 * 21 20 11 23 23 C 1.50060 * 117.96194 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47228 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47058 * 119.99866 * 1 2 3 26 26 H 1.08995 * 109.47172 * 239.99922 * 1 2 3 27 27 H 1.08001 * 117.96257 * 359.23215 * 3 2 1 28 28 H 1.08998 * 109.47236 * 60.00394 * 6 4 3 29 29 H 1.08999 * 109.47133 * 180.02562 * 6 4 3 30 30 H 1.09005 * 109.46843 * 300.00349 * 6 4 3 31 31 H 1.09002 * 109.64210 * 190.87728 * 7 4 3 32 32 H 1.09004 * 109.63915 * 70.25051 * 7 4 3 33 33 H 1.08999 * 109.46767 * 295.94768 * 10 8 7 34 34 H 1.09000 * 109.47064 * 55.95036 * 10 8 7 35 35 H 0.97000 * 120.00162 * 174.91712 * 15 14 12 36 36 H 1.09000 * 115.55260 * 339.94678 * 20 11 10 37 37 H 1.09000 * 117.49937 * 0.02562 * 21 20 11 38 38 H 1.09002 * 117.49756 * 145.02020 * 21 20 11 39 39 H 1.08990 * 117.50025 * 252.50784 * 22 21 20 40 40 H 1.09000 * 117.49235 * 107.49205 * 22 21 20 41 41 H 1.08998 * 109.36288 * 317.36440 * 23 2 1 42 42 H 1.09005 * 109.35795 * 76.94548 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 0.0107 5 1 3.8900 2.0908 -0.6873 6 6 4.0649 1.6875 1.4187 7 6 4.2795 -0.0075 -0.4021 8 6 3.6702 -1.1472 0.4241 9 1 3.7161 -0.8966 1.4839 10 6 4.4420 -2.4433 0.1682 11 7 3.9164 -3.5033 1.0322 12 6 2.8902 -4.2974 0.5947 13 1 2.1179 -4.6094 1.2821 14 6 2.8425 -4.7013 -0.7326 15 7 3.9348 -4.6801 -1.4666 16 14 1.2280 -5.2751 -1.4768 17 1 0.2299 -4.1783 -1.3996 18 1 1.4435 -5.6498 -2.8975 19 1 0.7276 -6.4537 -0.7249 20 6 4.4887 -3.7137 2.3642 21 6 4.1440 -5.0197 3.0830 22 6 3.5288 -3.7009 3.5557 23 6 2.2106 -1.3254 0.0006 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8899 27 1 1.5089 2.0379 -0.0128 28 1 3.7773 0.9050 2.1209 29 1 5.1485 1.8045 1.4285 30 1 3.5956 2.6273 1.7098 31 1 5.3503 0.0539 -0.2081 32 1 4.1060 -0.1903 -1.4626 33 1 4.3266 -2.7348 -0.8757 34 1 5.4982 -2.2865 0.3871 35 1 3.9185 -5.0310 -2.3707 36 1 5.4866 -3.3027 2.5175 37 1 3.4917 -5.7225 2.5646 38 1 4.9152 -5.4683 3.7092 39 1 3.8952 -3.2819 4.4927 40 1 2.4715 -3.5360 3.3483 41 1 1.7119 -1.9990 0.6974 42 1 2.1749 -1.7539 -1.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356056800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:12 Heat of formation + Delta-G solvation = 37.315042 kcal Electronic energy + Delta-G solvation = -19478.933704 eV Core-core repulsion = 16845.674891 eV Total energy + Delta-G solvation = -2633.258813 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.84322 -36.81802 -33.78713 -33.04980 -31.68910 -29.58110 -26.54067 -26.10600 -25.40833 -23.33998 -21.31521 -21.07777 -19.93966 -19.55818 -16.83115 -16.08096 -15.43104 -14.95708 -14.41782 -14.15005 -13.78778 -13.62839 -13.25463 -12.96468 -12.50939 -12.23872 -12.08907 -11.96212 -11.83105 -11.29191 -11.04726 -10.95650 -10.92803 -10.76751 -10.54756 -10.54454 -10.40156 -10.04702 -9.71965 -9.62369 -9.48106 -9.27799 -9.13125 -8.38508 -8.23872 -6.39416 -5.78567 -3.34589 2.75011 3.34263 3.40656 3.42838 4.43751 5.01175 5.08945 5.20382 5.30774 5.38863 5.47171 5.57887 5.69034 5.81626 5.93629 5.94916 5.97745 6.10176 6.11752 6.17908 6.19250 6.24945 6.30423 6.37196 6.41199 6.52114 6.53380 6.62706 6.68443 6.70793 6.89600 6.96242 7.02370 7.16049 7.22982 7.25574 7.30165 7.62636 7.76111 7.85015 8.54804 9.20579 9.83061 10.41113 11.21290 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.009496 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.995338 B = 2948.019577 C = 3697.964870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C -0.177 4.177 4 C -0.054 4.054 5 H 0.063 0.937 6 C -0.139 4.139 7 C -0.109 4.109 8 C -0.098 4.098 9 H 0.057 0.943 10 C 0.153 3.847 11 N -0.548 5.548 12 C -0.253 4.253 13 H 0.059 0.941 14 C 0.020 3.980 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.131 3.869 21 C -0.199 4.199 22 C -0.228 4.228 23 C -0.063 4.063 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 9.438 3.326 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.108 4.108 3 C -0.195 4.195 4 C -0.072 4.072 5 H 0.082 0.918 6 C -0.196 4.196 7 C -0.147 4.147 8 C -0.118 4.118 9 H 0.076 0.924 10 C 0.027 3.973 11 N -0.264 5.264 12 C -0.383 4.383 13 H 0.076 0.924 14 C -0.181 4.181 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.021 3.979 21 C -0.238 4.238 22 C -0.269 4.269 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.179 9.441 3.059 9.994 hybrid contribution -1.008 -0.362 -0.348 1.126 sum -2.187 9.079 2.712 9.725 Atomic orbital electron populations 1.20968 0.93616 1.01137 1.02036 1.21296 0.95233 0.96387 0.97930 1.21718 0.95527 0.96439 1.05791 1.19909 0.92780 0.97840 0.96715 0.91847 1.21801 1.00151 1.00797 0.96867 1.21665 0.98786 0.94184 1.00095 1.21814 0.95433 0.96245 0.98330 0.92443 1.21026 0.92535 0.84752 0.98973 1.43378 1.38373 1.33404 1.11239 1.18784 0.99812 1.26378 0.93335 0.92381 1.25148 0.96257 0.98199 0.98486 1.69875 1.25751 1.47052 1.10284 0.86577 0.84325 0.78940 0.78288 1.20522 1.21604 1.20781 1.21099 0.93657 0.97778 0.85393 1.23058 1.03906 0.92253 1.04610 1.23340 1.00567 1.02906 1.00125 1.20304 0.95062 0.92223 1.02381 0.92988 0.92021 0.91874 0.89257 0.92188 0.93054 0.93564 0.92499 0.92302 0.88526 0.95879 0.93344 0.89728 0.88429 0.91061 0.91196 0.89870 0.90008 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.98 36.01 0.36 -1.45 16 2 C -0.11 -1.85 5.84 -100.94 -0.59 -2.44 16 3 C -0.18 -2.75 8.64 -35.90 -0.31 -3.06 16 4 C -0.05 -0.80 3.12 -92.07 -0.29 -1.09 16 5 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 6 C -0.14 -1.87 8.97 37.16 0.33 -1.54 16 7 C -0.11 -1.83 4.75 -26.52 -0.13 -1.95 16 8 C -0.10 -1.88 2.40 -90.41 -0.22 -2.10 16 9 H 0.06 1.13 6.44 -51.93 -0.33 0.80 16 10 C 0.15 3.44 4.85 -4.04 -0.02 3.42 16 11 N -0.55 -13.08 2.69 -165.65 -0.45 -13.53 16 12 C -0.25 -6.53 6.29 -15.06 -0.09 -6.63 16 13 H 0.06 1.54 7.21 -52.49 -0.38 1.16 16 14 C 0.02 0.52 4.98 -17.43 -0.09 0.43 16 15 N -0.89 -24.65 11.43 55.49 0.63 -24.02 16 16 Si 0.89 21.03 29.60 -169.99 -5.03 16.00 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.13 2.79 6.62 -67.93 -0.45 2.35 16 21 C -0.20 -4.04 9.81 -26.73 -0.26 -4.30 16 22 C -0.23 -4.42 10.08 -26.73 -0.27 -4.69 16 23 C -0.06 -1.25 4.35 -28.18 -0.12 -1.38 16 24 H 0.05 0.67 7.56 -51.93 -0.39 0.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.09 1.25 7.56 -52.49 -0.40 0.86 16 28 H 0.06 0.89 6.58 -51.93 -0.34 0.55 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.10 2.47 5.48 -51.93 -0.28 2.19 16 34 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 35 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 37 H 0.10 2.19 6.96 -51.93 -0.36 1.83 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.72 7.98 -51.93 -0.41 1.30 16 41 H 0.08 1.80 7.09 -51.93 -0.37 1.43 16 42 H 0.07 1.53 8.08 -51.93 -0.42 1.11 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -26.47 324.34 -9.56 -36.03 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.47 Total: 5.05 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -2.14 Total: -24.43 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.19 Total: -37.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.47 -9.56 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356056800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.347 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds