Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29443 * 117.96084 * 2 1 4 4 C 1.50068 * 124.07164 * 179.50731 * 3 2 1 5 5 H 1.09008 * 109.35211 * 137.34088 * 4 3 2 6 6 C 1.52997 * 109.35851 * 256.92335 * 4 3 2 7 7 C 1.53018 * 110.14914 * 17.13238 * 4 3 2 8 8 C 1.53383 * 108.44014 * 310.56316 * 7 4 3 9 9 H 1.08999 * 109.64652 * 307.75247 * 8 7 4 10 10 C 1.53004 * 109.81951 * 187.22289 * 8 7 4 11 11 N 1.46503 * 109.47320 * 175.94982 * 10 8 7 12 12 C 1.36935 * 120.00110 * 89.99649 * 11 10 8 13 13 H 1.08002 * 120.00397 * 218.00734 * 12 11 10 14 14 C 1.38819 * 119.99687 * 38.00568 * 12 11 10 15 15 N 1.31611 * 120.00103 * 20.37185 * 14 12 11 16 16 Si 1.86806 * 119.99641 * 200.36814 * 14 12 11 17 17 H 1.48493 * 109.47229 * 60.00443 * 16 14 12 18 18 H 1.48504 * 109.46740 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47097 * 300.00172 * 16 14 12 20 20 C 1.46498 * 119.99797 * 270.00071 * 11 10 8 21 21 C 1.53006 * 117.49663 * 194.23817 * 20 11 10 22 22 C 1.53004 * 60.00038 * 252.50921 * 21 20 11 23 23 C 1.50060 * 117.96194 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47228 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47058 * 119.99866 * 1 2 3 26 26 H 1.08995 * 109.47172 * 239.99922 * 1 2 3 27 27 H 1.08001 * 117.96257 * 359.23215 * 3 2 1 28 28 H 1.08998 * 109.47236 * 60.00394 * 6 4 3 29 29 H 1.08999 * 109.47133 * 180.02562 * 6 4 3 30 30 H 1.09005 * 109.46843 * 300.00349 * 6 4 3 31 31 H 1.09002 * 109.64210 * 190.87728 * 7 4 3 32 32 H 1.09004 * 109.63915 * 70.25051 * 7 4 3 33 33 H 1.08999 * 109.46767 * 295.94768 * 10 8 7 34 34 H 1.09000 * 109.47064 * 55.95036 * 10 8 7 35 35 H 0.97000 * 120.00162 * 174.91712 * 15 14 12 36 36 H 1.09000 * 115.55260 * 339.94678 * 20 11 10 37 37 H 1.09000 * 117.49937 * 0.02562 * 21 20 11 38 38 H 1.09002 * 117.49756 * 145.02020 * 21 20 11 39 39 H 1.08990 * 117.50025 * 252.50784 * 22 21 20 40 40 H 1.09000 * 117.49235 * 107.49205 * 22 21 20 41 41 H 1.08998 * 109.36288 * 317.36440 * 23 2 1 42 42 H 1.09005 * 109.35795 * 76.94548 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 0.0107 5 1 3.8900 2.0908 -0.6873 6 6 4.0649 1.6875 1.4187 7 6 4.2795 -0.0075 -0.4021 8 6 3.6702 -1.1472 0.4241 9 1 3.7161 -0.8966 1.4839 10 6 4.4420 -2.4433 0.1682 11 7 3.9164 -3.5033 1.0322 12 6 2.8902 -4.2974 0.5947 13 1 2.1179 -4.6094 1.2821 14 6 2.8425 -4.7013 -0.7326 15 7 3.9348 -4.6801 -1.4666 16 14 1.2280 -5.2751 -1.4768 17 1 0.2299 -4.1783 -1.3996 18 1 1.4435 -5.6498 -2.8975 19 1 0.7276 -6.4537 -0.7249 20 6 4.4887 -3.7137 2.3642 21 6 4.1440 -5.0197 3.0830 22 6 3.5288 -3.7009 3.5557 23 6 2.2106 -1.3254 0.0006 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8899 27 1 1.5089 2.0379 -0.0128 28 1 3.7773 0.9050 2.1209 29 1 5.1485 1.8045 1.4285 30 1 3.5956 2.6273 1.7098 31 1 5.3503 0.0539 -0.2081 32 1 4.1060 -0.1903 -1.4626 33 1 4.3266 -2.7348 -0.8757 34 1 5.4982 -2.2865 0.3871 35 1 3.9185 -5.0310 -2.3707 36 1 5.4866 -3.3027 2.5175 37 1 3.4917 -5.7225 2.5646 38 1 4.9152 -5.4683 3.7092 39 1 3.8952 -3.2819 4.4927 40 1 2.4715 -3.5360 3.3483 41 1 1.7119 -1.9990 0.6974 42 1 2.1749 -1.7539 -1.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356056800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = 26.397696 kcal Electronic energy + Delta-G solvation = -19479.407116 eV Core-core repulsion = 16845.674891 eV Total energy + Delta-G solvation = -2633.732225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27726 -38.50312 -35.51167 -34.33680 -33.44200 -31.32985 -27.87244 -27.52084 -27.04051 -25.11215 -22.92832 -22.48102 -21.57730 -21.19881 -18.40910 -17.81354 -17.21863 -16.38158 -16.16851 -15.79719 -15.32767 -15.01596 -14.62602 -14.44178 -13.96517 -13.66619 -13.64581 -13.32283 -13.25729 -12.94728 -12.82573 -12.66842 -12.47530 -12.22094 -12.19963 -12.11149 -12.02120 -11.81529 -11.40925 -11.14474 -11.09249 -10.80803 -10.75423 -10.36174 -9.54502 -8.34580 -7.78319 -5.38359 1.40355 1.44194 1.46324 1.48888 2.47351 3.19114 3.46610 3.55170 3.87973 3.96032 4.13351 4.32616 4.33104 4.47229 4.49390 4.54107 4.64075 4.65336 4.72479 4.80284 4.85910 4.90219 4.96232 5.02137 5.04506 5.06520 5.10720 5.17933 5.23164 5.24356 5.37108 5.40349 5.47579 5.56628 5.56856 5.66671 5.73435 5.92398 5.96410 6.27766 6.52088 7.21306 7.91771 8.43266 9.16342 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.009496 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.995338 B = 2948.019577 C = 3697.964870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C -0.157 4.157 4 C -0.056 4.056 5 H 0.087 0.913 6 C -0.134 4.134 7 C -0.106 4.106 8 C -0.085 4.085 9 H 0.057 0.943 10 C 0.155 3.845 11 N -0.564 5.564 12 C -0.242 4.242 13 H 0.046 0.954 14 C -0.023 4.023 15 N -0.916 5.916 16 Si 0.936 3.064 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.105 3.895 21 C -0.198 4.198 22 C -0.204 4.204 23 C -0.051 4.051 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.251 0.749 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 11.685 4.610 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 C -0.175 4.175 4 C -0.074 4.074 5 H 0.105 0.895 6 C -0.191 4.191 7 C -0.144 4.144 8 C -0.105 4.105 9 H 0.075 0.925 10 C 0.030 3.970 11 N -0.281 5.281 12 C -0.373 4.373 13 H 0.064 0.936 14 C -0.220 4.220 15 N -0.561 5.561 16 Si 0.765 3.235 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.205 1.205 20 C -0.004 4.004 21 C -0.237 4.237 22 C -0.244 4.244 23 C -0.088 4.088 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.209 11.692 4.370 12.540 hybrid contribution -0.942 -1.041 -0.678 1.559 sum -2.150 10.651 3.693 11.476 Atomic orbital electron populations 1.20942 0.92187 1.02707 1.01506 1.21222 0.96409 0.95277 1.00910 1.22040 0.96274 0.96659 1.02525 1.20004 0.92095 0.96990 0.98325 0.89472 1.21750 1.01194 1.01073 0.95125 1.21631 0.99584 0.94448 0.98733 1.21595 0.94739 0.95541 0.98662 0.92451 1.20945 0.93082 0.85965 0.97051 1.43526 1.38382 1.33783 1.12369 1.18772 0.99915 1.25452 0.93140 0.93612 1.25625 0.98271 0.99194 0.98921 1.69993 1.27165 1.48728 1.10182 0.85827 0.81791 0.78554 0.77360 1.20283 1.21916 1.20454 1.21365 0.94994 0.99259 0.84741 1.23050 1.04204 0.91818 1.04616 1.23267 0.99132 1.01755 1.00287 1.20039 0.95715 0.93611 0.99417 0.90277 0.92808 0.92264 0.86501 0.93918 0.91787 0.91565 0.91368 0.93662 0.91767 0.95720 0.93946 0.88098 0.91208 0.88215 0.87867 0.91603 0.93042 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.98 71.24 0.71 -2.64 16 2 C -0.14 -4.59 5.84 -15.10 -0.09 -4.68 16 3 C -0.16 -4.44 8.64 27.04 0.23 -4.20 16 4 C -0.06 -1.48 3.12 -11.73 -0.04 -1.52 16 5 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 6 C -0.13 -3.14 8.97 71.98 0.65 -2.49 16 7 C -0.11 -3.43 4.75 30.73 0.15 -3.29 16 8 C -0.08 -3.30 2.40 -10.66 -0.03 -3.32 16 9 H 0.06 2.23 6.44 -2.39 -0.02 2.22 16 10 C 0.16 7.17 4.85 86.38 0.42 7.59 16 11 N -0.56 -27.51 2.69 -678.00 -1.82 -29.33 16 12 C -0.24 -12.92 6.29 84.04 0.53 -12.39 16 13 H 0.05 2.52 7.21 -2.91 -0.02 2.50 16 14 C -0.02 -1.24 4.98 84.86 0.42 -0.82 16 15 N -0.92 -52.91 11.43 21.65 0.25 -52.66 16 16 Si 0.94 44.66 29.60 68.60 2.03 46.69 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 C 0.11 4.44 6.62 45.00 0.30 4.73 16 21 C -0.20 -7.85 9.81 30.60 0.30 -7.55 16 22 C -0.20 -7.58 10.08 30.60 0.31 -7.27 16 23 C -0.05 -2.08 4.35 29.66 0.13 -1.95 16 24 H 0.08 1.81 7.56 -2.39 -0.02 1.79 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.12 2.73 7.56 -2.91 -0.02 2.71 16 28 H 0.04 1.15 6.58 -2.39 -0.02 1.13 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 2.04 8.10 -2.39 -0.02 2.03 16 32 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.06 3.44 5.48 -2.39 -0.01 3.43 16 34 H 0.02 1.09 8.04 -2.39 -0.02 1.07 16 35 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 36 H 0.10 3.90 8.10 -2.39 -0.02 3.88 16 37 H 0.07 3.16 6.96 -2.39 -0.02 3.15 16 38 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.07 2.69 7.98 -2.39 -0.02 2.67 16 41 H 0.05 2.36 7.09 -2.39 -0.02 2.35 16 42 H 0.03 1.59 8.08 -2.38 -0.02 1.57 16 Total: -1.00 -58.61 324.34 5.41 -53.20 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.96 Total: 21.88 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.99 Total: -39.79 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.57 Total: -81.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -58.61 5.41 -53.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356056800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.602 kcal (2) G-P(sol) polarization free energy of solvation -58.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds